Browse Element(s) Details


Os.46651.1.S1_at

Description gb:AK120408.1
DB_XREF= gi:37990031
TID=Os.46651.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dentin phosphoryn protein (OSJNBa0017E08.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091M08, full insert sequence.
FL= gb:AK120408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3538011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein
LOC_Os10g35350OsAffx.13097.1.S1_s_at11/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35350Os.46613.1.S2_at4/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35360OsAffx.7995.1.S1_x_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35360OsAffx.7995.1.S1_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35370Os.9230.1.S1_x_at11/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_x_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified
LOC_Os10g35412NANA10+18597495..18601748retrotransposon protein, putative, unclassified
LOC_Os10g35424Os.11724.2.S1_s_at1/1110+18603063..18603852hypothetical protein
LOC_Os10g35436Os.46550.1.A1_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_s_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.47809.1.S1_a_at11/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_x_at9/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46550.2.S1_at6/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46127.1.S1_x_at5/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.46382.2.S1_x_at4/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.53725.1.S1_x_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35436Os.17135.1.S1_at1/1110+18606065..18624126Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46651.1.S1_at--136--10571Chr10:18584321..18584345 (25 bp)
TTCTTCTTGCGTTTCTTTCAACTGA
LOC_Os10g35380
Os.46651.1.S1_at--34--5291Chr10:18584453..18584477 (25 bp)
GAAGGTTCGTGGAGCCATTTCCAGC
LOC_Os10g35380
Os.46651.1.S1_at--558--10291Chr10:18584470..18584494 (25 bp)
TTTCCAGCTGCCTTCCAAATAACAG
LOC_Os10g35380
Os.46651.1.S1_at--1157--10471Chr10:18584496..18584520 (25 bp)
TTAAAAATCCTTGTGCCTGCGCTAG
LOC_Os10g35380
Os.46651.1.S1_at--1083--4031Chr10:18585221..18585245 (25 bp)
CGTTCCATCTGCAGCTCAATATGAT
LOC_Os10g35380
Os.46651.1.S1_at--620--5551Chr10:18585253..18585277 (25 bp)
GAAACGCACTCAGCTGTCACAGAAG
LOC_Os10g35380
Os.46651.1.S1_at--774--6451Chr10:18585328..18585352 (25 bp)
GATCAACTAACAACCTCTTTGCAGC
LOC_Os10g35380
Os.46651.1.S1_at--758--1311Chr10:18585397..18585421 (25 bp)
AGATGGACTGATACTCTGACCTGCA
LOC_Os10g35380
Os.46651.1.S1_at--59--10311Chr10:18585468..18585492 (25 bp)
TTTCCCCTGTTGTTTTTGCTCATGT
LOC_Os10g35380
Os.46651.1.S1_at--767--7071Chr10:18585498..18585522 (25 bp)
GTAATTTTTTCTTCTCATCTAGCGA
LOC_Os10g35380
Os.46651.1.S1_at--313--6831Chr10:18585627..18585651 (25 bp)
GTTTCAGTTATTCAGAGACGTCCAT
LOC_Os10g35380
Target Sequence 
TTCTTCTTGCGTTTCTTTCAACTGAAAGCATGAAGGTTCGTGGAGCCATTTCCAGCTGCCTTCCAAATAACAGCTTAAAA
ATCCTTGTGCCTGCGCTAGAGAAATTTGTGTCGTTCCATCTGCAGCTCAATATGATCACAGAGGAAACGCACTCAGCTGT
CACAGAAGTTATCGAGAAATGCAAACTTTCATAGAAAGAGTGAAGAGGGGCCTGTACAGATCAACTAACAACCTCTTTGC
AGCAAAAAAGCATACACACAAGTGTTTGTCTTGGCCTGGGGCTCTGCAGATGGACTGATACTCTGACCTGCAGTGGGCTT
GGGAGCTAACAATGGTTTCATTCTTTTTTTTTTNATGTTTTCCCCTGTTGTTTTTGCTCATGTTTTGTGTAATTTTTTCT
TCTCATCTAGCGATGTTATTTTTCTTAGCATGATGGGAGTAGCCCTCCTTTTTTTTTNCTCTAATTAAGTGTAAAGTAGC
AACAGCATAGGGATGAATGTTCAGTGTAGTGTGTGGTGTTTCAGTTATTCAGAGACGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis