Browse Element(s) Details


OsAffx.30679.2.S1_x_at

Description gb:NM_197144.1
DB_XREF= gi:37535647
TID=OsAffx.30679.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041P03.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3512011/11hypothetical protein
LOC_Os10g353302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein
LOC_Os10g35130Os.5140.1.S1_at11/1110+18417659..18420680expressed protein
LOC_Os10g35140Os.17692.1.S1_at11/1110+18421795..18424392Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g35150Os.8937.1.S1_at10/1110+18424581..18428480expressed protein
LOC_Os10g35160OsAffx.30677.1.S1_x_at10/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.5.S1_x_at9/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.1.S1_at8/1110+18440015..18443070hypothetical protein
LOC_Os10g35160Os.53605.1.S1_at2/1110+18440015..18443070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30679.2.S1_x_at--1076--5111Chr10:18416071..18416095 (25 bp)
GCACAAGCACAAGCCCGACGAGGTG
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--222--6031Chr10:18416102..18416126 (25 bp)
GAGATGGTGGTGGACGCCTTACCCA
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--1127--5791Chr10:18416114..18416138 (25 bp)
GACGCCTTACCCAAGGAGGAAGAGG
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--1046--5892Chr10:18416204..18416228 (25 bp)
GAGCTGATGGGATACCTGCGGACCA
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--682--3831Chr10:18416219..18416243 (25 bp)
CTGCGGACCAAGGAGGTTATGGCCT
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--1107--6771Chr10:18416234..18416258 (25 bp)
GTTATGGCCTACCTCGCGCGCGAGA
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--874--5051Chr10:18416293..18416317 (25 bp)
GCAGCACATGTTCGTCGGCCAAGAA
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--313--6711Chr10:18416302..18416326 (25 bp)
GTTCGTCGGCCAAGAACTCAGGCAG
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--942--4131Chr10:18416332..18416356 (25 bp)
CGCTGCCCAAGTTCACGAGAACAGA
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--726--1431Chr10:18416349..18416373 (25 bp)
AGAACAGAGAATTCGACGCCTTCGT
LOC_Os10g35120
OsAffx.30679.2.S1_x_at--75--9952Chr10:18416378..18416402 (25 bp)
TACCAGTACCGCACCAAGGGCTACG
LOC_Os10g35120
Target Sequence 
GCACAAGCACAAGCCCGACGAGGTGAAAGAGGAGATGGTGGTGGACGCCTTACCCAAGGAGGAAGAGGAGGAGGAGCGCG
GGAAGAGGAGGAAGAAGAAGAGGAAGAAGCTGGTGACGGTGAAGCTGAGCGACGAGCTGATGGGATACCTGCGGACCAAG
GAGGTTATGGCCTACCTCGCGCGCGAGACGCCTCGCCCGCTCCCGATCGATCCCAGCATCGCGCAGCACATGTTCGTCGG
CCAAGAACTCAGGCAGGAAATCGCTGCCCAAGTTCACGAGAACAGAGAATTCGACGCCTTCGTCCTCTACCAGTACCGCA
CCAAGGGCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30679.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis