Browse Element(s) Details


Os.7805.1.S1_a_at

Description gb:AK068374.1
DB_XREF= gi:32978392
TID=Os.7805.1
CNT=153
FEA=FLmRNA
TIER=FL+Stack
STK=60
UG=Os.7805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alpha-galactosidase preproprotein (OSJNBa0041P03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151E12, full insert sequence.
FL= gb:AK059912.1 gb:AK068374.1 gb:AB039671.1 gb:AK058373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3511011/11Alpha-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein
LOC_Os10g35130Os.5140.1.S1_at11/1110+18417659..18420680expressed protein
LOC_Os10g35140Os.17692.1.S1_at11/1110+18421795..18424392Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g35150Os.8937.1.S1_at10/1110+18424581..18428480expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004557molecular_functionalpha-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7805.1.S1_a_at--1129--6371Chr10:18410481..18410589 (25 bp)
GATCGCTGTCAACCAAGATAGTCTA
LOC_Os10g35110
Os.7805.1.S1_a_at--819--5491Chr10:18410788..18410812 (25 bp)
GAACAGGCAGTCATACCAGGCAACC
LOC_Os10g35110
Os.7805.1.S1_a_at--289--1731Chr10:18410802..18410826 (25 bp)
ACCAGGCAACCATCACTGCACATTG
LOC_Os10g35110
Os.7805.1.S1_a_at--324--391Chr10:18410813..18410837 (25 bp)
ATCACTGCACATTGGTCGAACATCG
LOC_Os10g35110
Os.7805.1.S1_a_at--607--31Chr10:18410823..18410847 (25 bp)
ATTGGTCGAACATCGGGCTCGCTGG
LOC_Os10g35110
Os.7805.1.S1_a_at--1134--6391Chr10:18410847..18410871 (25 bp)
GATCGGTCGCGGTCACTGCTCGTGA
LOC_Os10g35110
Os.7805.1.S1_a_at--1044--6411Chr10:18410870..18410982 (25 bp)
GATCTATGGGCGCACTCTTCGTTCG
LOC_Os10g35110
Os.7805.1.S1_a_at--898--9391Chr10:18410976..18411000 (25 bp)
TCGTTCGCGGCTCAGGGACAGATAT
LOC_Os10g35110
Os.7805.1.S1_a_at--309--251Chr10:18410997..18411021 (25 bp)
ATATCAGCATCGGTGGCGCCTCATG
LOC_Os10g35110
Os.7805.1.S1_a_at--344--3551Chr10:18411004..18411028 (25 bp)
CATCGGTGGCGCCTCATGACTGCAA
LOC_Os10g35110
Os.7805.1.S1_a_at--390--6271Chr10:18411029..18411053 (25 bp)
GATGTATGTCTTGACACCAAACTAG
LOC_Os10g35110
Target Sequence 
GATCGCTGTCAACCAAGATAGTCTAGGTGTCCNAAGGAAAGAAAGTACAATCTGACAACGGATTGGAGGTTTGGGCCGGG
CCACTCAGCAACAACAGGAAGGCTGTGGTGCTCTGGAACAGGCAGTCATACCAGGCAACCATCACTGCACATTGGTCGAA
CATCGGGCTCGCTGGATCGGTCGCGGTCACTGCTCGTGATCTATGGGCGCACTCTTCGTTCGCGGCTCAGGGACAGATAT
CAGCATCGGTGGCGCCTCATGACTGCAAGATGTATGTCTTGACACCAAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7805.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis