Browse Element(s) Details


Os.8937.1.S1_at

Description gb:AK106067.1
DB_XREF= gi:32991276
TID=Os.8937.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0041P03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H01, full insert sequence.
FL= gb:AK071373.1 gb:AK106067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3515010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein
LOC_Os10g35130Os.5140.1.S1_at11/1110+18417659..18420680expressed protein
LOC_Os10g35140Os.17692.1.S1_at11/1110+18421795..18424392Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g35150Os.8937.1.S1_at10/1110+18424581..18428480expressed protein
LOC_Os10g35160OsAffx.30677.1.S1_x_at10/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.5.S1_x_at9/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.1.S1_at8/1110+18440015..18443070hypothetical protein
LOC_Os10g35160Os.53605.1.S1_at2/1110+18440015..18443070hypothetical protein
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8937.1.S1_at--193--10551NONE
TTCATTTCAAGATTACGCGCTCGAG
NONE
Os.8937.1.S1_at--465--2211Chr10:18425047..18425071 (25 bp)
ACAAGCTGCAGGGTTCTCTCTGGAC
LOC_Os10g35150
Os.8937.1.S1_at--497--6111Chr10:18424948..18424972 (25 bp)
GAGTCCAGCACCATGACTACAACTA
LOC_Os10g35150
Os.8937.1.S1_at--143--9691Chr10:18424914..18424938 (25 bp)
TCACCCCATGTGATCTGAACAGCTG
LOC_Os10g35150
Os.8937.1.S1_at--952--2151Chr10:18424896..18424920 (25 bp)
ACAGCTGATCTGTGTCATCTGAGAA
LOC_Os10g35150
Os.8937.1.S1_at--390--2751Chr10:18424852..18424876 (25 bp)
AAGAAACCCCATGGCTGCAGACTTT
LOC_Os10g35150
Os.8937.1.S1_at--955--351Chr10:18424816..18424840 (25 bp)
ATCAGATTTTTACTTACCCCAGCGA
LOC_Os10g35150
Os.8937.1.S1_at--1001--8951Chr10:18424757..18424781 (25 bp)
TGACACTGACATTTGCCGGATAGAG
LOC_Os10g35150
Os.8937.1.S1_at--563--10351Chr10:18424731..18424755 (25 bp)
TTTATACCGCTTGAGACTTGAGACT
LOC_Os10g35150
Os.8937.1.S1_at--281--5692Chr03:7873161..7873575 (25 bp)
GACTTGAGAGTTTACCTGCAGCTGA
NONE
Os.8937.1.S1_at--537--4751Chr10:18424639..18424663 (25 bp)
GCTGAAGATGTAAACCGACCGTGTA
LOC_Os10g35150
Target Sequence 
TTCATTTCAAGATTACGCGCTCGAGAGCATGGCCAACGGGAAGCGAAACGACGAGACGGAGAAGAAGGTCAGCAAGACTC
ATCTTGCTCCGTTCGGGCTCGCGGCGCACAAGCTGCAGGGTTCTCTCTGGACCAACCCGAGAACAGGGGACCGTGACAGG
ATGGTCTCCCTCTTCGGCGCCGCGGATTCCTGGCTCAAGCAGCTCGGAGTCCAGCACCATGACTACAACTACTTCATCAC
TCACCCCATGTGATCTGAACAGCTGATCTGTGTCATCTGAGAAGAGTAGGTTGCAACTTGCAAAGAAACCCCATGGCTGC
AGACTTTGGAGAGGAGGCATCAGATTTTTACTTACCCCAGCGACAATGGTAGCAAACGTTTTACCGTTTTGTCAAAATGA
CACTGACATTTGCCGGATAGAGTTTTATACCGCTTGAGACTTGAGACTTGAGAGTTTACCTGCAGCTGAATATATACCGA
ATATATCAGGACTTATAGGTTTTGTGTTTTTCTTGGCTGAAGATGTAAACCGACCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis