Browse Element(s) Details


Os.5140.1.S1_at

Description gb:AK108599.1
DB_XREF= gi:32993808
TID=Os.5140.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0041P03.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E06, full insert sequence.
FL= gb:AK108599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3513011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein
LOC_Os10g35130Os.5140.1.S1_at11/1110+18417659..18420680expressed protein
LOC_Os10g35140Os.17692.1.S1_at11/1110+18421795..18424392Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g35150Os.8937.1.S1_at10/1110+18424581..18428480expressed protein
LOC_Os10g35160OsAffx.30677.1.S1_x_at10/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.5.S1_x_at9/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.1.S1_at8/1110+18440015..18443070hypothetical protein
LOC_Os10g35160Os.53605.1.S1_at2/1110+18440015..18443070hypothetical protein
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5140.1.S1_at--885--6331Chr10:18420185..18420209 (25 bp)
GATGCTAGGCACATTGTTCAGAATG
LOC_Os10g35130
Os.5140.1.S1_at--817--671Chr10:18420207..18420231 (25 bp)
ATGACAAACTGCTGGGCGACAGGGT
LOC_Os10g35130
Os.5140.1.S1_at--658--5751Chr10:18420283..18420307 (25 bp)
GACGGGAGTACGTCGCGATGAACTA
LOC_Os10g35130
Os.5140.1.S1_at--699--951Chr10:18420331..18420355 (25 bp)
AGGAGTACTCCCTCATGAAAACGAT
LOC_Os10g35130
Os.5140.1.S1_at--1045--9371Chr10:18420360..18420384 (25 bp)
TCGATGAGATTAGACAGCTGCTGCT
LOC_Os10g35130
Os.5140.1.S1_at--272--2331Chr10:18420391..18420415 (25 bp)
AAAGTAGTGTACAACAGCATCCTCC
LOC_Os10g35130
Os.5140.1.S1_at--530--5591Chr10:18420429..18420453 (25 bp)
GAAATCATTCATTGGCTTACTGGAG
LOC_Os10g35130
Os.5140.1.S1_at--33--8311Chr10:18420442..18420466 (25 bp)
GGCTTACTGGAGTCTCTCAGTTTTT
LOC_Os10g35130
Os.5140.1.S1_at--674--10391Chr10:18420467..18420491 (25 bp)
TTTTCCTTTTGTCACTCATATGCTC
LOC_Os10g35130
Os.5140.1.S1_at--945--10351Chr10:18420492..18420516 (25 bp)
TTTTTGAGTGTTTTACTGCCCTGCT
LOC_Os10g35130
Os.5140.1.S1_at--520--9171Chr10:18420508..18420532 (25 bp)
TGCCCTGCTGTACGTTGCAAACAAA
LOC_Os10g35130
Target Sequence 
GATGCTAGGCACATTGTTCAGAATGACAAACTGCTGGGCGACAGGGTAGATGAAATCGTCAAAGAATGGGATGCACAGAA
GGAGGCCTTCTACGAGAAGACGGGAGTACGTCGCGATGAACTAGCAGTAGTTGAACATGACGAATCAGGAGTACTCCCTC
ATGAAAACGATGAATTCGATGAGATTAGACAGCTGCTGCTAGAGTGAAAGTAGTGTACAACAGCATCCTCCTAAAAAAAC
AGATGAAATCATTCATTGGCTTACTGGAGTCTCTCAGTTTTTTTTTCCTTTTGTCACTCATATGCTCTTTTTGAGTGTTT
TACTGCCCTGCTGTACGTTGCAAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis