Browse Element(s) Details


Os.17692.1.S1_at

Description gb:AK071193.1
DB_XREF= gi:32981216
TID=Os.17692.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0041P03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088F15, full insert sequence.
FL= gb:AK071193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3514011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein
LOC_Os10g35130Os.5140.1.S1_at11/1110+18417659..18420680expressed protein
LOC_Os10g35140Os.17692.1.S1_at11/1110+18421795..18424392Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g35150Os.8937.1.S1_at10/1110+18424581..18428480expressed protein
LOC_Os10g35160OsAffx.30677.1.S1_x_at10/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.5.S1_x_at9/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.1.S1_at8/1110+18440015..18443070hypothetical protein
LOC_Os10g35160Os.53605.1.S1_at2/1110+18440015..18443070hypothetical protein
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17692.1.S1_at--280--2311Chr10:18423812..18423836 (25 bp)
AAAGGCCGTTGCAAGATTCTTCTGG
LOC_Os10g35140
Os.17692.1.S1_at--1010--1251Chr10:18423825..18423849 (25 bp)
AGATTCTTCTGGAGACACTGGCACA
LOC_Os10g35140
Os.17692.1.S1_at--358--5091Chr10:18423868..18423892 (25 bp)
GCACCTGTAACATTTCATTGGCGCA
LOC_Os10g35140
Os.17692.1.S1_at--1032--5331Chr10:18423905..18423929 (25 bp)
GAAGATTTAAAGTACATCCCACGGT
LOC_Os10g35140
Os.17692.1.S1_at--1050--8591Chr10:18423974..18423998 (25 bp)
TGGTGGTATAACCTCTGAACATAGT
LOC_Os10g35140
Os.17692.1.S1_at--294--10851Chr10:18424011..18424035 (25 bp)
TTGGGCATCAGTGCATACTTCCGAG
LOC_Os10g35140
Os.17692.1.S1_at--819--10051Chr10:18424046..18424070 (25 bp)
TAGTCATCTACTTCATTTCGGCTTG
LOC_Os10g35140
Os.17692.1.S1_at--652--8191Chr10:18424154..18424178 (25 bp)
GGAAGTTGCCCCTTTGTACAAGTAG
LOC_Os10g35140
Os.17692.1.S1_at--605--6651Chr10:18424225..18424249 (25 bp)
GTTGAGCACAAGCTTCGTCTATCGA
LOC_Os10g35140
Os.17692.1.S1_at--600--6411Chr10:18424248..18424272 (25 bp)
GATCTAAGTTCAGACACTTTCCCTG
LOC_Os10g35140
Os.17692.1.S1_at--771--4111Chr10:18424280..18424304 (25 bp)
CGAAGCATGTCCCTTTTGTGAGAAA
LOC_Os10g35140
Target Sequence 
AAAGGCCGTTGCAAGATTCTTCTGGAGACACTGGCACAGATGAATGCTGTACTGAAGCACCTGTAACATTTCATTGGCGC
AAAACAGCAATGTGAAGATTTAAAGTACATCCCACGGTCCCAACANTCTCACACAGCTTGAACTGTGAAAGAAGACAGGG
ATATGGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCGAGNTTCCCAAGTTAGTC
ATCTACTTCATTTCGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTATGAAC
TGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTGTACAAGTAGTTTGGAGCATAAAAAAATAGTTGATCGAAAGG
AAGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCATGTC
CCTTTTGTGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis