Browse Element(s) Details


OsAffx.7995.1.S1_x_at

Description gb:NM_197168.1
DB_XREF= gi:37535695
TID=OsAffx.7995.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0017E08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein
LOC_Os10g35350OsAffx.13097.1.S1_s_at11/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35350Os.46613.1.S2_at4/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35360OsAffx.7995.1.S1_x_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35360OsAffx.7995.1.S1_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35370Os.9230.1.S1_x_at11/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_x_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein
LOC_Os10g35390Os.17135.1.S1_at11/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.2.S1_x_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35390Os.46550.1.A1_at3/1110+18587440..185907461-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor, putative, expressed
LOC_Os10g35400Os.31312.2.S1_x_at1/1110+18593570..18596685retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7995.1.S1_x_at--184--6011Chr10:18569248..18569272 (25 bp)
GAGAGCGCGGGCACAAGTCGAGCAG
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--629--2852Chr03:4144159..4144180 (22 bp)
AAGTCGAGCAGCAGGTCGTCACCCA
NONE
OsAffx.7995.1.S1_x_at--369--1031Chr10:18569222..18569246 (25 bp)
AGGTCGTCACCCACGGCGCTGTCGG
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--849--7552Chr10:4026569..4027051 (25 bp)
GGGCTCGACTTCTTCGTGTCGCGCT
NONE
OsAffx.7995.1.S1_x_at--994--7451Chr10:18569087..18569111 (25 bp)
GTGTCGTCACGTCCAAGCAGCTCGT
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--431--2711Chr10:18569073..18569097 (25 bp)
AAGCAGCTCGTCTCGCACGTGAAGC
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--876--9351Chr10:18569061..18569085 (25 bp)
TCGCACGTGAAGCTCTGCCTGGTGT
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--417--1911Chr10:18569057..18569081 (25 bp)
ACGTGAAGCTCTGCCTGGTGTGCCG
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--141--1591Chr10:18569051..18569075 (25 bp)
AGCTCTGCCTGGTGTGCCGCGACGA
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--164--9331Chr10:18569015..18569039 (25 bp)
TCCCATCTGCACATTGCTGCAATCA
LOC_Os10g35360
OsAffx.7995.1.S1_x_at--452--9031Chr10:18569008..18569032 (25 bp)
TGCACATTGCTGCAATCAAGCAAAG
LOC_Os10g35360
Target Sequence 
GAGAGCGCGGGCACAAGTCGAGCAGCAGGTCGTCACCCACGGCGCTGTCGGCGACGCCCTCCACGTCGGCGCGGCGCGCG
GCCACGGCGGGCTCGACTTCTTCGTGTCGCGCTCGCACGCCGCCCGCCTCATCGACCTCGTCACCTCGCTGTCGTCTGCC
CGTGTCGTCACGTCCAAGCAGCTCGTCTCGCACGTGAAGCTCTGCCTGGTGTGCCGCGACGACCTCATCTTCCTCCCATC
TGCACATTGCTGCAATCAAGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7995.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis