Browse Element(s) Details


Os.54734.1.S1_at

Description gb:AK106632.1
DB_XREF= gi:32991841
TID=Os.54734.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D03, full insert sequence.
FL= gb:AK106632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0922010/11Cytochrome P450 family protein, expressed
LOC_Os06g092103/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09170Os.53571.1.S1_at11/116+4611262..4614893Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g09180Os.49853.1.S1_a_at11/116+4615609..4617146Protein kinase domain containing protein, expressed
LOC_Os06g09190Os.57190.1.S1_at11/116+4623189..4624518Protein kinase domain containing protein, expressed
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54734.1.S1_at--1006--2691Chr06:4633179..4633285 (25 bp)
AAGCTCAAGCTGATGACGATGGTGC
LOC_Os06g09220
Os.54734.1.S1_at--691--9151Chr06:4633070..4633094 (25 bp)
TGCCCAAGGGCACGATGACGATGAT
LOC_Os06g09220
Os.54734.1.S1_at--825--6271Chr06:4633051..4633075 (25 bp)
GATGATACCGATGGCGATCCTGCAC
LOC_Os06g09220
Os.54734.1.S1_at--869--4972Chr06:4631378..4631402 (25 bp)
GCATCGGGCAGGACTTCGCGATGAT
LOC_Os06g09210
Os.54734.1.S1_at--223--6152Chr06:4631449..4631473 (25 bp)
GAGGTCTCACCGGAGTACGTGCACG
LOC_Os06g09210
Os.54734.1.S1_at--1154--3212Chr06:4631502..4631526 (25 bp)
CAAGTGCGGGCTCCCAATGGTGCTC
LOC_Os06g09210
Os.54734.1.S1_at--114--10012Chr06:4631542..4631566 (25 bp)
TAGAACGTGTAGAACCTTTGGTCGC
NONE
Os.54734.1.S1_at--858--3672Chr06:4631557..4631581 (25 bp)
CTTTGGTCGCTAATTTCTCGGGCAT
NONE
Os.54734.1.S1_at--1150--3112Chr06:4631568..4631592 (25 bp)
AATTTCTCGGGCATTTTCTATGGGA
NONE
Os.54734.1.S1_at--120--10532Chr06:4631583..4631607 (25 bp)
TTCTATGGGATTGTGTTCGCAACAT
NONE
Os.54734.1.S1_at--875--8952Chr06:4631613..4631637 (25 bp)
TGAAAGACCTGCCTCAAAATCTTGT
NONE
Target Sequence 
AAGCTCAAGCTGATGACGATGGTGCTGTACGAGACGCTGCGGCTGTACGGGCCGGTGAGCCTGATGGCGAGGACGGCGAC
GGCGGACGCGGAGCTCGGCGGCGTGCGGGTGCCCAAGGGCACGATGACGATGATACCGATGGCGATCCTGCACCGCGACG
CGGACGTGTGGGGCGCGGGCGCCGGCGAGTTCGACCCGCTCCGGTTCCGCGGCGGCGTGAACAAGGCGGCGGCGCACGCC
GGCGCGCTGCTGGCCTTCTCGCTGGGGCAGAGGTCGTGCATCGGGCAGGACTTCGCGATGATGGAGGCGAAGACGACGCT
GGCCATGATCCTCCGGCGCTTCGCCTTCGAGGTCTCACCGGAGTACGTGCACGCGCCGCTCGACTTGCTGACGCTTCAGC
CCAAGTGCGGGCTCCCAATGGTGCTCAAGCTCTTGGATCAATAGAACGTGTAGAACCTTTGGTCGCTAATTTCTCGGGCA
TTTTCTATGGGATTGTGTTCGCAACATTTGATTGAAAGACCTGCCTCAAAATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis