Browse Element(s) Details


OsAffx.15322.1.S1_x_at

Description tigr:9634.m00846
TID=OsAffx.15322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0896011/11hypothetical protein
LOC_Os06g092201/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08910Os.27742.2.S1_a_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910Os.27742.1.S1_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910OsAffx.4776.1.S1_s_at2/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08920OsAffx.27520.1.S1_at11/116+4496906..4498414hypothetical protein
LOC_Os06g08920OsAffx.21973.1.S1_at1/116+4496906..4498414hypothetical protein
LOC_Os06g08930OsAffx.27521.1.S1_at11/116+4499767..4501666Ligand-gated ion channel family protein
LOC_Os06g08940NANA6+4504108..4507416retrotransposon protein, putative, unclassified
LOC_Os06g08950NANA6+4508033..4514188retrotransposon protein, putative, unclassified
LOC_Os06g08960OsAffx.15322.1.S1_x_at11/116+4515894..4523961hypothetical protein
LOC_Os06g08960OsAffx.13740.1.S1_at1/116+4515894..4523961hypothetical protein
LOC_Os06g08970OsAffx.27522.1.S1_x_at7/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08970OsAffx.3613.1.S1_x_at2/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08970OsAffx.3613.1.S1_at1/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08980OsAffx.15323.1.S1_at5/116+4528985..4529416hypothetical protein
LOC_Os06g08990Os.55034.1.S1_at11/116+4529989..4531664expressed protein
LOC_Os06g09000OsAffx.15324.1.S1_at11/116+4533691..4534054hypothetical protein
LOC_Os06g09010OsAffx.15323.1.S1_at8/116+4535225..4536805hypothetical protein
LOC_Os06g09010OsAffx.15726.1.S1_at1/116+4535225..4536805hypothetical protein
LOC_Os06g09020Os.10201.1.S1_at11/116+4537330..4539523expressed protein
LOC_Os06g09030OsAffx.27523.1.S1_x_at1/116+4545927..4546190hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15322.1.S1_x_at--1160--4711Chr06:4523905..4523929 (25 bp)
GCTGTACGGCAAACCGGAGCCCGGG
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--458--4251Chr06:4523885..4523909 (25 bp)
CCGGGCCGAGCTTTCTGGCGCTGAT
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--143--3991Chr06:4523884..4523908 (25 bp)
CGGGCCGAGCTTTCTGGCGCTGATC
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--1027--8411Chr06:4523882..4523906 (25 bp)
GGCCGAGCTTTCTGGCGCTGATCGG
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--349--4892Chr06:4523876..4523900 (25 bp)
GCTTTCTGGCGCTGATCGGCAACGG
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--102--6151Chr06:4523682..4523706 (25 bp)
GAGGTCGGGCAGAAGTTCCAGGAGC
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--958--4091Chr06:4523650..4523674 (25 bp)
CGACGTGATCTCGCATACGGCGTTC
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--1143--3911Chr06:4523633..4523657 (25 bp)
CGGCGTTCGGCAGCACACTAGTGGA
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--792--4631Chr06:4523631..4523655 (25 bp)
GCGTTCGGCAGCACACTAGTGGAGA
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--652--4031Chr06:4523630..4523654 (25 bp)
CGTTCGGCAGCACACTAGTGGAGAA
LOC_Os06g08960
OsAffx.15322.1.S1_x_at--716--3314Chr07:17356542..17356566 (25 bp)
CACTAGTGGAGAAAGTGTTTTTCCT
NONE
Target Sequence 
GCTGTACGGCAAACCGGAGCCCGGGCCGAGCTTTCTGGCGCTGATCGGCAACGGCCTCGCCTTCGTCAACGGCGACGACT
GGGTGCGGCACCGCCGCGTCGTGCACCCGGCGTTCGCCATGGACAAGCTCAAGATGATGGCCAAGACGATGGCGGAGTGC
GCGCGGGAGGTGATTCGGGCGTGGGAGGCGCGTGCCGCCGCCGGCGAGCGGCGGGTGCAGGTGGAGGTCGGGCAGAAGTT
CCAGGAGCTGACCGCCGACGTGATCTCGCATACGGCGTTCGGCAGCACACTAGTGGAGAAAGTGTTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15322.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis