Browse Element(s) Details


OsAffx.21973.1.S1_at

Description gb:NM_189174.1
DB_XREF= gi:34905431
GEN=P0487H02.9
TID=OsAffx.21973.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0487H02.9 (P0487H02.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g267101/11expressed protein
LOC_Os10g392801/11hypothetical protein
LOC_Os06g089201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26680NANA8+16079875..16080126hypothetical protein
LOC_Os08g26690NANA8+16095981..16100103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26710Os.15737.1.S1_x_at11/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.14313.1.S1_at2/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.21973.1.S1_at1/118+16103043..16114894expressed protein
LOC_Os08g26700Os.49243.2.S1_x_at11/118+16104619..16107419expressed protein
LOC_Os08g26700Os.49243.1.S1_x_at10/118+16104619..16107419expressed protein
LOC_Os08g26720OsAffx.5941.1.S1_at10/118+16118693..16120489hypothetical protein
LOC_Os08g26730NANA8+16127664..16128425retrotransposon, putative, centromere-specific
LOC_Os08g26740OsAffx.29372.1.S1_at11/118+16131084..16134652hypothetical protein
LOC_Os08g26750NANA8+16137870..16139106retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21973.1.S1_at--1058--10052Chr08:10950775..10950797 (23 bp)
TAGTCGTCCATGGTTTCGGGCGGAT
NONE
OsAffx.21973.1.S1_at--833--1311Chr01:10928306..10928330 (25 bp)
AGAGGCGGGCTCAAAGGACAACTTT
NONE
OsAffx.21973.1.S1_at--249--7471NONE
GTGTGCGGCGGACCCATACCATATC
NONE
OsAffx.21973.1.S1_at--568--294Chr06:6806398..6806422 (25 bp)
ATACCATATCCTTGTTTCGGACGGA
NONE
OsAffx.21973.1.S1_at--1038--4012Chr06:4497361..4497441 (24 bp)
CGTTTTCACCCCTAGAATCTATCTA
LOC_Os06g08920
OsAffx.21973.1.S1_at--930--9591Chr01:10927001..10927025 (25 bp)
TCATGCCACCACATAGGATTCCTAT
NONE
OsAffx.21973.1.S1_at--1021--65523Chr11:15005486..15005508 (23 bp)
GATTCCTATAAACGCTCCTAAACCG
NONE
OsAffx.21973.1.S1_at--446--9831NONE
TAAACCGCGACGTGCGTTGCTGTCT
NONE
OsAffx.21973.1.S1_at--367--10711Chr01:10926252..10926276 (25 bp)
TTGCTGTCTCGAGCAGTCGAGCTCT
NONE
OsAffx.21973.1.S1_at--1069--1931Chr01:10926206..10926230 (25 bp)
ACGGCGTGACGTCGCAACTTCGCAA
NONE
OsAffx.21973.1.S1_at--2--2531Chr01:10926191..10926215 (25 bp)
AACTTCGCAAGCCTCTGCGTGACTG
NONE
Target Sequence 
TAGTCGTCCATGGTTTCGGGCGGATCGGTGGAGCGGTCGAGTGGAAGGACGCGACGACGACCGACGGGAGGGAAGCGCGG
CGAGAGGCGGGCTCAAAGGACAACTTTCAAAGAGGGGATGGAATAGGCGACGGCGTGTGCGGCGGACCCATACCATATCC
TTGTTTCGGACGGATTCGGAGTGGATCGGATCGGATATTATCCGATCCGTTTTCACCCCTAGAATCTATCTATTATATAC
TAAAAGTCCATTTTAAACTTCCTACAAACGCTCTCATGCCACCACATAGGATTCCTATAAACGCTCCTAAACCGCGACGT
GCGTTGCTGTCTCGAGCAGTCGAGCTCTCCGCTCTCGGCGTCTCGCGTGACGGCGTGACGTCGCAACTTCGCAAGCCTCT
GCGTGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis