Browse Element(s) Details


Os.49243.1.S1_x_at

Description gb:AK106035.1
DB_XREF= gi:32991244
TID=Os.49243.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D07, full insert sequence.
FL= gb:AK106035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2670010/11expressed protein
LOC_Os06g370591/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26680NANA8+16079875..16080126hypothetical protein
LOC_Os08g26690NANA8+16095981..16100103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26710Os.15737.1.S1_x_at11/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.14313.1.S1_at2/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.21973.1.S1_at1/118+16103043..16114894expressed protein
LOC_Os08g26700Os.49243.2.S1_x_at11/118+16104619..16107419expressed protein
LOC_Os08g26700Os.49243.1.S1_x_at10/118+16104619..16107419expressed protein
LOC_Os08g26720OsAffx.5941.1.S1_at10/118+16118693..16120489hypothetical protein
LOC_Os08g26730NANA8+16127664..16128425retrotransposon, putative, centromere-specific
LOC_Os08g26740OsAffx.29372.1.S1_at11/118+16131084..16134652hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49243.1.S1_x_at--826--5693Chr06:21876829..21876849 (21 bp)
GACTAGGTTTGACAGCTGGTTTCAT
NONE
Os.49243.1.S1_x_at--652--3291NONE
CAAAGTCTTGTGAAGCGGCTCGGGT
NONE
Os.49243.1.S1_x_at--1019--1911Chr08:16105295..16105319 (25 bp)
ACGGGCAGCATTGCACTAAGGGCTA
LOC_Os08g26700
Os.49243.1.S1_x_at--832--5931Chr08:16105263..16105287 (25 bp)
GAGCATGTCGTCTGGAGGCCTTGTC
LOC_Os08g26700
Os.49243.1.S1_x_at--82--6111Chr08:16105230..16105254 (25 bp)
GAGTCCGGAAGGTCCTATTGCTGGC
LOC_Os08g26700
Os.49243.1.S1_x_at--389--10232Chr06:21878290..21878313 (24 bp)
TATTGCTGGCCTCTTTGGTGATTCC
LOC_Os06g37059
Os.49243.1.S1_x_at--895--8611Chr08:16105200..16105224 (25 bp)
TGGTGATTCCAGCTCTGCATATCGC
LOC_Os08g26700
Os.49243.1.S1_x_at--985--7471Chr08:16105126..16105150 (25 bp)
GTGGGAACCACCTGAGAACATCGTC
LOC_Os08g26700
Os.49243.1.S1_x_at--418--5971Chr08:16105113..16105137 (25 bp)
GAGAACATCGTCAACAGTCTTCCTT
LOC_Os08g26700
Os.49243.1.S1_x_at--890--1151Chr08:16105098..16105122 (25 bp)
AGTCTTCCTTTTGCATGTCGACATT
LOC_Os08g26700
Os.49243.1.S1_x_at--52--7231Chr08:16105082..16105106 (25 bp)
GTCGACATTGTTCTATCGCCAGAGT
LOC_Os08g26700
Target Sequence 
GACTAGGTTTGACAGCTGGTTTCATATTTAAAGATACCACTCAGTCAAAGTCTTGTGAAGCGGCTCGGGTGAAATTCAAG
GAGGCGACAGGCTTGACGCGACGGGCAGCATTGCACTAAGGGCTACCACGCCGAGCATGTCGTCTGGAGGCCTTGTCGCT
GACCCGAGTCCGGAAGGTCCTATTGCTGGCCTCTTTGGTGATTCCAGCTCTGCATATCGCCTGACGGTCAGGTCGGCGGA
GGCAGGTGCCTTCCACCTGGTGCACGTTCGTGGGAACCACCTGAGAACATCGTCAACAGTCTTCCTTTTGCATGTCGACA
TTGTTCTATCGCCAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49243.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis