Browse Element(s) Details


Os.15737.1.S1_x_at

Description gb:AK060790.1
DB_XREF= gi:32970808
TID=Os.15737.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D11, full insert sequence.
FL= gb:AK060790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2671011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26680NANA8+16079875..16080126hypothetical protein
LOC_Os08g26690NANA8+16095981..16100103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26710Os.15737.1.S1_x_at11/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.14313.1.S1_at2/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.21973.1.S1_at1/118+16103043..16114894expressed protein
LOC_Os08g26700Os.49243.2.S1_x_at11/118+16104619..16107419expressed protein
LOC_Os08g26700Os.49243.1.S1_x_at10/118+16104619..16107419expressed protein
LOC_Os08g26720OsAffx.5941.1.S1_at10/118+16118693..16120489hypothetical protein
LOC_Os08g26730NANA8+16127664..16128425retrotransposon, putative, centromere-specific
LOC_Os08g26740OsAffx.29372.1.S1_at11/118+16131084..16134652hypothetical protein
LOC_Os08g26750NANA8+16137870..16139106retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15737.1.S1_x_at--497--4051Chr08:16114344..16114368 (25 bp)
CGATCACCTTATGCGCAACGACGAA
LOC_Os08g26710
Os.15737.1.S1_x_at--703--6591Chr08:16114369..16114393 (25 bp)
GATTGTGCCACAAAATTCGCCGCTC
LOC_Os08g26710
Os.15737.1.S1_x_at--866--1091Chr08:16114451..16114475 (25 bp)
AGTGTGTGGCGCTGGACCAACGCTA
LOC_Os08g26710
Os.15737.1.S1_x_at--747--8431Chr08:16114484..16114508 (25 bp)
GGCCATCCCAATGGACAGCGTGGAT
LOC_Os08g26710
Os.15737.1.S1_x_at--333--10611Chr08:16114576..16114600 (25 bp)
TTCGGCGTGCTGCAGGCTGTCTATA
LOC_Os08g26710
Os.15737.1.S1_x_at--286--1771Chr08:16114600..16114624 (25 bp)
ACGGTCCTAAAGCTCGTGCGAAAGG
LOC_Os08g26710
Os.15737.1.S1_x_at--1099--51Chr08:16114640..16114664 (25 bp)
ATTGAGCCTGCAGTTTGTGTGTGGA
LOC_Os08g26710
Os.15737.1.S1_x_at--706--8151Chr08:16114662..16114686 (25 bp)
GGAAAGCGCTCGTATAGGCATATAT
LOC_Os08g26710
Os.15737.1.S1_x_at--1057--6791Chr08:16114700..16114724 (25 bp)
GTCTATTTCTTATCTTTTCCCTATC
LOC_Os08g26710
Os.15737.1.S1_x_at--925--2771Chr08:16114780..16114804 (25 bp)
AAGAGCTTTGTCCATCGCCAGACAT
LOC_Os08g26710
Os.15737.1.S1_x_at--1068--2491Chr08:16114834..16114858 (25 bp)
AACATGTATCTGTCATCTACTTGCC
LOC_Os08g26710
Target Sequence 
CGATCACCTTATGCGCAACGACGAAGATTGTGCCACAAAATTCGCCGCTCTCTGCGACGGGGTCAACTTCAACCTGGACG
ACCCTAGCCGCAACTACCTGCAGAAAGAGTGTGTGGCGCTGGACCAACGCTACCGGAGTCGGCCATCCCAATGGACAGCG
TGGATGCTGCGCGAGCACTGCCGCAACCCCTGCGTCGCCGTCGCTTCTGTGCTTGCCATCATCGCCATCGCGTTCGGCGT
GCTGCAGGCTGTCTATACGGTCCTAAAGCTCGTGCGAAAGGTAAAATAACAATCTGATTGAGCCTGCAGTTTGTGTGTGG
AAAGCGCTCGTATAGGCATATATGTGTTTGTTTCAAGTCTATTTCTTATCTTTTCCCTATCTTTTCTTCTTAAATTACTT
ATTCCACTTTGAGTGGTCTGTTTATAAACTCATAATAAGAGCTTTGTCCATCGCCAGACATAAAGCGTCTACAATTATAT
AAAAAATATAAACATGTATCTGTCATCTACTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15737.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis