Browse Element(s) Details


OsAffx.5941.1.S1_at

Description tigr:9636.m02634
TID=OsAffx.5941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2672010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26690NANA8+16095981..16100103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26710Os.15737.1.S1_x_at11/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.14313.1.S1_at2/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.21973.1.S1_at1/118+16103043..16114894expressed protein
LOC_Os08g26700Os.49243.2.S1_x_at11/118+16104619..16107419expressed protein
LOC_Os08g26700Os.49243.1.S1_x_at10/118+16104619..16107419expressed protein
LOC_Os08g26720OsAffx.5941.1.S1_at10/118+16118693..16120489hypothetical protein
LOC_Os08g26730NANA8+16127664..16128425retrotransposon, putative, centromere-specific
LOC_Os08g26740OsAffx.29372.1.S1_at11/118+16131084..16134652hypothetical protein
LOC_Os08g26750NANA8+16137870..16139106retrotransposon protein, putative, unclassified
LOC_Os08g26760NANA8+16140321..16141746retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26770NANA8+16142115..16143941retrotransposon protein, putative, unclassified
LOC_Os08g26780NANA8+16144476..16144910retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5941.1.S1_at--703--5271Chr08:16118742..16118766 (25 bp)
GAATGATGACGGCTCCATCGGTTGA
LOC_Os08g26720
OsAffx.5941.1.S1_at--208--693Chr08:16118747..16118771 (25 bp)
ATGACGGCTCCATCGGTTGAGAAGA
LOC_Os08g26720
OsAffx.5941.1.S1_at--1055--9212Chr08:16118755..16118779 (25 bp)
TCCATCGGTTGAGAAGAGTTTACAT
LOC_Os08g26720
OsAffx.5941.1.S1_at--402--1211Chr08:16118771..16118795 (25 bp)
AGTTTACATGATTGCTTCTCGAGGA
LOC_Os08g26720
OsAffx.5941.1.S1_at--254--8832Chr08:16118779..16118803 (25 bp)
TGATTGCTTCTCGAGGATAGCAGGG
LOC_Os08g26720
OsAffx.5941.1.S1_at--908--7671NONE
GGGTAAAGCCGTCAACAGGCACTGG
NONE
OsAffx.5941.1.S1_at--338--2491Chr08:16120321..16120345 (25 bp)
AACAGGCACTGGACAGCTCGCTGCT
LOC_Os08g26720
OsAffx.5941.1.S1_at--874--9311Chr08:16120345..16120369 (25 bp)
TCCCAGATATCACTCTACTACACAC
LOC_Os08g26720
OsAffx.5941.1.S1_at--614--9831Chr08:16120363..16120387 (25 bp)
TACACACCCGGACAGAGGTGACTTC
LOC_Os08g26720
OsAffx.5941.1.S1_at--597--5651Chr08:16120373..16120397 (25 bp)
GACAGAGGTGACTTCAGCATCGTGA
LOC_Os08g26720
OsAffx.5941.1.S1_at--442--10531Chr08:16120385..16120409 (25 bp)
TTCAGCATCGTGAGGGCTGTCACCA
LOC_Os08g26720
Target Sequence 
GAATGATGACGGCTCCATCGGTTGAGAAGAGTTTACATGATTGCTTCTCGAGGATAGCAGGGGTAAAGCCGTCAACAGGC
ACTGGACAGCTCGCTGCTCCCAGATATCACTCTACTACACACCCGGACAGAGGTGACTTCAGCATCGTGAGGGCTGTCAC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis