Browse Element(s) Details


Os.27742.2.S1_a_at

Description gb:AK120124.1
DB_XREF= gi:37989747
TID=Os.27742.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026C10, full insert sequence.
FL= gb:AK120124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0891011/11Ligand-gated ion channel family protein, expressed
LOC_Os06g0909011/11Ligand-gated ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08890OsAffx.4774.1.S1_at11/116+4471701..4474022Ligand-gated ion channel family protein, expressed
LOC_Os06g08900OsAffx.27521.1.S1_at11/116+4480241..4486784Ligand-gated ion channel family protein
LOC_Os06g08910Os.27742.2.S1_a_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910Os.27742.1.S1_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910OsAffx.4776.1.S1_s_at2/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08920OsAffx.27520.1.S1_at11/116+4496906..4498414hypothetical protein
LOC_Os06g08920OsAffx.21973.1.S1_at1/116+4496906..4498414hypothetical protein
LOC_Os06g08930OsAffx.27521.1.S1_at11/116+4499767..4501666Ligand-gated ion channel family protein
LOC_Os06g08940NANA6+4504108..4507416retrotransposon protein, putative, unclassified
LOC_Os06g08950NANA6+4508033..4514188retrotransposon protein, putative, unclassified
LOC_Os06g08960OsAffx.15322.1.S1_x_at11/116+4515894..4523961hypothetical protein
LOC_Os06g08960OsAffx.13740.1.S1_at1/116+4515894..4523961hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27742.2.S1_a_at--709--3752Chr06:4570657..4570681 (25 bp)
CTCATGCTGATGATTAGGTTCTCCA
LOC_Os06g09090
Os.27742.2.S1_a_at--808--1012Chr06:4570642..4570666 (25 bp)
AGGTTCTCCATGTCAATTCTTGCCA
LOC_Os06g09090
Os.27742.2.S1_a_at--594--6052Chr06:4570602..4570626 (25 bp)
GAGATTCTGATGTGCAAAGTCCTGA
LOC_Os06g09090
Os.27742.2.S1_a_at--293--2852Chr06:4570586..4570610 (25 bp)
AAGTCCTGATGTGGGTGGTCGAAAC
LOC_Os06g09090
Os.27742.2.S1_a_at--443--1492Chr06:4570538..4570562 (25 bp)
AGCACAGAACAGCATGGGTTGCATT
LOC_Os06g09090
Os.27742.2.S1_a_at--884--5852Chr06:4570421..4570445 (25 bp)
GACCAATTCAGAATGGCCCTGTGCC
LOC_Os06g09090
Os.27742.2.S1_a_at--693--9873Chr06:4570369..4570393 (25 bp)
TACATGGTCATGCTGAGCGTGCTCT
LOC_Os06g09090
Os.27742.2.S1_a_at--566--2412Chr06:4570335..4570359 (25 bp)
AAAACAAGAATGCTCCATCTCTTCA
LOC_Os06g09090
Os.27742.2.S1_a_at--37--7873Chr06:4570301..4570325 (25 bp)
GGTATTAACCAATAATCTGCTGCAG
LOC_Os06g09090
Os.27742.2.S1_a_at--697--6813Chr06:4570189..4570213 (25 bp)
GTTTAGTAACTGATCACGTCTTATG
LOC_Os06g09090
Os.27742.2.S1_a_at--1043--1892Chr06:4570174..4570198 (25 bp)
ACGTCTTATGTTTTATCACTTGCAA
LOC_Os06g09090
Target Sequence 
CTCATGCTGATGATTAGGTTCTCCATGTCAATTCTTGCCAATTACACCCAAATTAGAGATTCTGATGTGCAAAGTCCTGA
TGTGGGTGGTCGAAACAATGCACATGAAGAATCTAATCAAGCACAGAACAGCATGGGTTGCATTGTGGCTGATATACACC
TCCATGAAGTTCAGAATTGACAGTTCCCAGGATATCCATGGGAGTGTCGAACGTGCTGATGGCGAAGAGCCTCGACCAAT
TCAGAATGGCCCTGTGCCTACAAATTCCACCCAGACAGTATGAATTACATGGTCATGCTGAGCGTGCTCTGGAAATATAA
AAACAAGAATGCTCCATCTCTTCATTTATTGTAGGTATTAACCAATAATCTGCTGCAGAAATTAGTCTGGGATGTTCCCA
TTCAGCAACTAGCCATGCTTCACCGCAGGCCGTGTTGGATTAGATAGTTCTATGCATAGTTTAGTAACTGATCACGTCTT
ATGTTTTATCACTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27742.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis