Browse Element(s) Details


Os.53571.1.S1_at

Description gb:AK073349.1
DB_XREF= gi:32983372
TID=Os.53571.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026I12, full insert sequence.
FL= gb:AK073349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0917011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09120OsAffx.4776.1.S1_s_at11/116+4586798..4590084Ligand-gated ion channel family protein, expressed
LOC_Os06g09130Os.54329.1.S1_at11/116+4592917..4596946Ligand-gated ion channel family protein, expressed
LOC_Os06g09140NANA6+4603421..4604035hypothetical protein
LOC_Os06g09150NANA6+4604515..4605856transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160OsAffx.30261.2.S1_s_at11/116+4606807..4607109hypothetical protein
LOC_Os06g09170Os.53571.1.S1_at11/116+4611262..4614893Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g09180Os.49853.1.S1_a_at11/116+4615609..4617146Protein kinase domain containing protein, expressed
LOC_Os06g09190Os.57190.1.S1_at11/116+4623189..4624518Protein kinase domain containing protein, expressed
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53571.1.S1_at--328--2231Chr06:4614224..4614248 (25 bp)
AAATTCGTTCCCATCAGCAGTTCTA
LOC_Os06g09170
Os.53571.1.S1_at--94--1231Chr06:4614242..4614266 (25 bp)
AGTTCTATCTGTTACCCCATTGCAC
LOC_Os06g09170
Os.53571.1.S1_at--926--9831Chr06:4614302..4614326 (25 bp)
TAAAGCATTCCCTCTTTCGTGGATC
LOC_Os06g09170
Os.53571.1.S1_at--575--5531Chr06:4614358..4614382 (25 bp)
GAAACATCTGACATATCCCAAGCTC
LOC_Os06g09170
Os.53571.1.S1_at--1116--7631Chr06:4614388..4614412 (25 bp)
GGGAGCAGCTAACGCTTGAACCATT
LOC_Os06g09170
Os.53571.1.S1_at--1030--4071Chr06:4614450..4614584 (25 bp)
CGAGCACGCTGGTACTATCATGAGT
LOC_Os06g09170
Os.53571.1.S1_at--570--411Chr06:4614576..4614600 (25 bp)
ATCATGAGTCGCTGTTGCTGCAGTT
LOC_Os06g09170
Os.53571.1.S1_at--1014--6651Chr06:4614642..4614666 (25 bp)
GTTGACTTTTTATTCGTCCTCGTCT
LOC_Os06g09170
Os.53571.1.S1_at--334--9391Chr06:4614661..4614685 (25 bp)
TCGTCTAATTTCTCCATTTGGCAGC
LOC_Os06g09170
Os.53571.1.S1_at--773--10651Chr06:4614811..4614835 (25 bp)
TTCCCGTGGTAGAATCTCGAGCGAA
LOC_Os06g09170
Os.53571.1.S1_at--673--5551Chr06:4614833..4614857 (25 bp)
GAAACCAACACTGGCTCCTTTTGAA
LOC_Os06g09170
Target Sequence 
AAATTCGTTCCCATCAGCAGTTCTATCTGTTACCCCATTGCACTTCTGCATAACGAATCAGATGTGTAATTTACTATCTA
AAGCATTCCCTCTTTCGTGGATCACATCATGTGTATAGAGAGAACCACCTATTGGAAACATCTGACATATCCCAAGCTCC
CTCTGGGAGCAGCTAACGCTTGAACCATTTTCAATCCTTCCTGCTCCTGAAGTCCTGAAGCATGACCGAGCACGCTGGTA
CTATCATGAGTCGCTGTTGCTGCAGTTGAGCGATATAAGCTGTCACTTCATTCTAATCAACTAAGGTCGTTGACTTTTTA
TTCGTCCTCGTCTAATTTCTCCATTTGGCAGCTTTGGGTTTGCTCTTGGTTGGGTGCCAACTGCCAATGACTTGACAAGT
TGACATTGTATGGTCAAAGCCCAATGGGGGAGTGAGCTTTATCACTTGTGTAACGATTAACAAATTTCTTAAAATCATTC
CCGTGGTAGAATCTCGAGCGAAACCAACACTGGCTCCTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis