Browse Element(s) Details


OsAffx.30261.2.S1_s_at

Description tigr:9634.m00869
TID=OsAffx.30261.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3228011/11hypothetical protein
LOC_Os06g0916011/11hypothetical protein
LOC_Os10g0371011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32210NANA10+16589834..16590547hypothetical protein
LOC_Os10g32240Os.9332.2.S1_x_at3/1110+16597513..16599612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32240Os.9332.2.S1_at1/1110+16597513..16599612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32250OsAffx.20387.1.S1_x_at1/1110+16599865..16602462transposon protein, putative, unclassified
LOC_Os10g32260NANA10+16603416..16606435hypothetical protein
LOC_Os10g32270Os.23611.1.S1_at11/1110+16608980..16614024expressed protein
LOC_Os10g32270Os.23611.2.S1_x_at11/1110+16608980..16614024expressed protein
LOC_Os10g32280OsAffx.30261.2.S1_s_at11/1110+16614464..16614912hypothetical protein
LOC_Os10g32290NANA10+16615916..16618392transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g32300Os.19611.3.S1_at11/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32300OsAffx.30640.1.S1_x_at1/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32324OsAffx.30638.1.S1_at11/1110+16627846..16629231hypothetical protein
LOC_Os10g32348Os.19611.1.S1_a_at11/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_x_at10/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_at8/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.17159.1.S1_x_at2/1110+16632246..16647440PsbP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30261.2.S1_s_at--1114--9216Chr10:1657438..1657462 (25 bp)
TCCAGGCCTCGGGTGAGGATTATTC
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--350--3496Chr10:1657440..1657464 (25 bp)
CAGGCCTCGGGTGAGGATTATTCTC
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--272--4476Chr10:1657443..1657467 (25 bp)
GCCTCGGGTGAGGATTATTCTCTCA
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--149--7395Chr10:1657450..1657474 (25 bp)
GTGAGGATTATTCTCTCACCCGTGG
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--90--8895Chr10:1657451..1657475 (25 bp)
TGAGGATTATTCTCTCACCCGTGGG
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--1043--6155Chr10:1657452..1657476 (25 bp)
GAGGATTATTCTCTCACCCGTGGGT
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--27--1015Chr10:1657453..1657477 (25 bp)
AGGATTATTCTCTCACCCGTGGGTC
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--1050--6535Chr10:1657455..1657479 (25 bp)
GATTATTCTCTCACCCGTGGGTCGG
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--1042--154Chr10:1657456..1657480 (25 bp)
ATTATTCTCTCACCCGTGGGTCGGC
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--1044--94Chr10:1657459..1657483 (25 bp)
ATTCTCTCACCCGTGGGTCGGCATG
LOC_Os10g03710
OsAffx.30261.2.S1_s_at--859--10574Chr10:1657460..1657484 (25 bp)
TTCTCTCACCCGTGGGTCGGCATGG
LOC_Os10g03710
Target Sequence 
TCCAGGCCTCGGGTGAGGATTATTCTCTCACCCGTGGGTCGGCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30261.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis