Browse Element(s) Details


OsAffx.30638.1.S1_at

Description tigr:9638.m02804
TID=OsAffx.30638.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3237211/11hypothetical protein
LOC_Os10g3232411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32300Os.19611.3.S1_at11/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32300OsAffx.30640.1.S1_x_at1/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32324OsAffx.30638.1.S1_at11/1110+16627846..16629231hypothetical protein
LOC_Os10g32348Os.19611.1.S1_a_at11/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_x_at10/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_at8/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.17159.1.S1_x_at2/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32372OsAffx.30638.1.S1_at11/1110+16647677..16649062hypothetical protein
LOC_Os10g32400OsAffx.30640.1.S1_x_at10/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.30640.1.S1_at8/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400Os.19611.1.S1_a_at6/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.17159.1.S1_x_at2/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32410Os.46500.2.S1_at7/1110+16664536..16665604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g32420OsAffx.20272.1.S1_at7/1110+16669329..16669754hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30638.1.S1_at--166--3352Chr10:16648968..16648992 (25 bp)
CACGTGGAGGCCGAGTTGAGCCATC
LOC_Os10g32372
OsAffx.30638.1.S1_at--706--892Chr10:16648961..16648985 (25 bp)
AGGCCGAGTTGAGCCATCGCTGCCA
LOC_Os10g32372
OsAffx.30638.1.S1_at--640--532Chr10:16648946..16648970 (25 bp)
ATCGCTGCCAGGGTTCAGCATGGTT
LOC_Os10g32372
OsAffx.30638.1.S1_at--580--3452Chr10:16648938..16648962 (25 bp)
CAGGGTTCAGCATGGTTCGACCGAA
LOC_Os10g32372
OsAffx.30638.1.S1_at--188--1652Chr10:16648905..16648929 (25 bp)
AGCCCAGGCCTCCAGCTTTGGTTAG
LOC_Os10g32372
OsAffx.30638.1.S1_at--177--6172Chr10:16647821..16647845 (25 bp)
GAGGATTGGCTCCAGCATTGTACGA
LOC_Os10g32372
OsAffx.30638.1.S1_at--231--6972Chr10:16647802..16647826 (25 bp)
GTACGAGAACTACCTTTGGATGTTG
LOC_Os10g32372
OsAffx.30638.1.S1_at--878--2392Chr10:16647766..16647790 (25 bp)
AAACTTCCAGATGTTGAAGACGGTA
LOC_Os10g32372
OsAffx.30638.1.S1_at--951--3092Chr10:16647742..16647766 (25 bp)
AATAGACTGTGCGAGTTGAACATGC
LOC_Os10g32372
OsAffx.30638.1.S1_at--516--10752Chr10:16647727..16647751 (25 bp)
TTGAACATGCAACTCTACTTACGTG
LOC_Os10g32372
OsAffx.30638.1.S1_at--1--2552Chr10:16647717..16647741 (25 bp)
AACTCTACTTACGTGCTGAGCTGAA
LOC_Os10g32372
Target Sequence 
CACGTGGAGGCCGAGTTGAGCCATCGCTGCCAGGGTTCAGCATGGTTCGACCGAACCTAGGCCAGCCCAGGCCTCCAGCT
TTGGTTAGGGGGCTGACAGGGAGGATTGGCTCCAGCATTGTACGAGAACTACCTTTGGATGTTGAAGACAACAATAAACT
TCCAGATGTTGAAGACGGTAATAGACTGTGCGAGTTGAACATGCAACTCTACTTACGTGCTGAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis