Browse Element(s) Details


OsAffx.20272.1.S1_at

Description tigr:9638.m02816
TID=OsAffx.20272.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g324207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32348Os.19611.1.S1_a_at11/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_x_at10/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_at8/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.17159.1.S1_x_at2/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32372OsAffx.30638.1.S1_at11/1110+16647677..16649062hypothetical protein
LOC_Os10g32400OsAffx.30640.1.S1_x_at10/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.30640.1.S1_at8/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400Os.19611.1.S1_a_at6/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.17159.1.S1_x_at2/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32410Os.46500.2.S1_at7/1110+16664536..16665604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g32420OsAffx.20272.1.S1_at7/1110+16669329..16669754hypothetical protein
LOC_Os10g32444Os.20246.1.S1_at11/1110+16676065..16677333expressed protein
LOC_Os10g32470Os.46467.1.S1_at11/1110+16678291..16681525expressed protein
LOC_Os10g32470Os.46467.2.S1_x_at11/1110+16678291..16681525expressed protein
LOC_Os10g32500OsAffx.30641.1.S1_at11/1110+16689531..16692082expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20272.1.S1_at--256--2771Chr10:16669694..16669718 (25 bp)
AAGACGCTACCGAGCCGGCGGCAAT
LOC_Os10g32420
OsAffx.20272.1.S1_at--565--7111Chr10:16669634..16669658 (25 bp)
GTCAGCGACGGTGGGAGGCCGTGCA
LOC_Os10g32420
OsAffx.20272.1.S1_at--927--8351Chr10:16669575..16669599 (25 bp)
GGCGGACGGCGATGTCCAGAGTGGA
LOC_Os10g32420
OsAffx.20272.1.S1_at--72--9231Chr10:16669561..16669585 (25 bp)
TCCAGAGTGGAGAGGCGCGCCCGGC
LOC_Os10g32420
OsAffx.20272.1.S1_at--947--9111Chr10:16669525..16669549 (25 bp)
TGCTGAGGCGCGACTGGCATCGGCA
LOC_Os10g32420
OsAffx.20272.1.S1_at--348--3551Chr10:16669508..16669532 (25 bp)
CATCGGCAGTGCAGTGGATCCACAC
LOC_Os10g32420
OsAffx.20272.1.S1_at--1100--1071Chr10:16669496..16669520 (25 bp)
AGTGGATCCACACCCCAGGCGGCAG
LOC_Os10g32420
OsAffx.20272.1.S1_at--998--8551Chr10:16667127..16667151 (25 bp)
TGGAGGTCACGGTCCGCATCGACGA
NONE
OsAffx.20272.1.S1_at--734--7091Chr10:16667122..16667146 (25 bp)
GTCACGGTCCGCATCGACGAAAATG
NONE
OsAffx.20272.1.S1_at--666--4211Chr10:16667114..16667138 (25 bp)
CCGCATCGACGAAAATGACTCCCAT
NONE
OsAffx.20272.1.S1_at--518--4091Chr10:16667108..16667132 (25 bp)
CGACGAAAATGACTCCCATGACTCC
NONE
Target Sequence 
AAGACGCTACCGAGCCGGCGGCAATGGGTGCGGAGTGGCGGCCGGCAGCAGTGGGGGACGGTCAGCGACGGTGGGAGGCC
GTGCAGCACGGCGAGGTACGGCCAGCGATGGCGACGGCGGGCGGACGGCGATGTCCAGAGTGGAGAGGCGCGCCCGGCGG
CCGGCGCGCTGCTGAGGCGCGACTGGCATCGGCAGTGCAGTGGATCCACACCCCAGGCGGCAGATCTAGCCTCCCCGACT
GCGGCGGCGGCGATGGCGGGGAGACCTTTGCTGCCGTCGCCGCCACACGGCCACAGCTCACGCCTCCCCGACGAAGCCCC
TTCCATCGCCGTCCTCTTCCTTGTCCCCGACCCCGCCTCAGCGTCCTCCCTCGTGCGGGAGCCTCCGCTGCGCTCCGGCG
TGGAGGTCACGGTCCGCATCGACGAAAATGACTCCCATGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis