Browse Element(s) Details


Os.23611.1.S1_at

Description gb:AK070542.1
DB_XREF= gi:32980566
TID=Os.23611.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0042E19.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055H02, full insert sequence.
FL= gb:AK070542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3227011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32210NANA10+16589834..16590547hypothetical protein
LOC_Os10g32240Os.9332.2.S1_x_at3/1110+16597513..16599612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32240Os.9332.2.S1_at1/1110+16597513..16599612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32250OsAffx.20387.1.S1_x_at1/1110+16599865..16602462transposon protein, putative, unclassified
LOC_Os10g32260NANA10+16603416..16606435hypothetical protein
LOC_Os10g32270Os.23611.1.S1_at11/1110+16608980..16614024expressed protein
LOC_Os10g32270Os.23611.2.S1_x_at11/1110+16608980..16614024expressed protein
LOC_Os10g32280OsAffx.30261.2.S1_s_at11/1110+16614464..16614912hypothetical protein
LOC_Os10g32290NANA10+16615916..16618392transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g32300Os.19611.3.S1_at11/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32300OsAffx.30640.1.S1_x_at1/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32324OsAffx.30638.1.S1_at11/1110+16627846..16629231hypothetical protein
LOC_Os10g32348Os.19611.1.S1_a_at11/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_x_at10/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_at8/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.17159.1.S1_x_at2/1110+16632246..16647440PsbP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23611.1.S1_at--379--6291Chr10:16613416..16613581 (25 bp)
GATGATTCCTACTAGTGCTCTTGCT
LOC_Os10g32270
Os.23611.1.S1_at--346--9091Chr10:16613572..16613596 (25 bp)
TGCTCTTGCTGATCCGAGGACAGAT
LOC_Os10g32270
Os.23611.1.S1_at--936--751Chr10:16613629..16613653 (25 bp)
ATGTAAGTTCGTCGTCCTGTGATCC
LOC_Os10g32270
Os.23611.1.S1_at--188--6771Chr10:16613692..16613716 (25 bp)
GTTAATACACCATCTCATCTGACTG
LOC_Os10g32270
Os.23611.1.S1_at--478--7471Chr10:16613734..16613758 (25 bp)
GTGTGCTAGCTAGTGCCAACGCATG
LOC_Os10g32270
Os.23611.1.S1_at--790--351Chr10:16613789..16613813 (25 bp)
ATAAGCTAGCTAGTCACGCTCTCAG
LOC_Os10g32270
Os.23611.1.S1_at--447--3771Chr10:16613807..16613831 (25 bp)
CTCTCAGCTGTTATTTGTCGTTCTA
LOC_Os10g32270
Os.23611.1.S1_at--126--7211Chr10:16613823..16613847 (25 bp)
GTCGTTCTAGCTATTTGATGCGGCA
LOC_Os10g32270
Os.23611.1.S1_at--758--6331Chr10:16613839..16613863 (25 bp)
GATGCGGCATGCAGTCACGAAGACT
LOC_Os10g32270
Os.23611.1.S1_at--933--7911Chr10:16613926..16613950 (25 bp)
GGTTGATTTGTACTCTATGTCGCAG
LOC_Os10g32270
Os.23611.1.S1_at--301--7011Chr10:16613964..16613988 (25 bp)
GTACTCTGCTTCTGTCTCAGTTGAA
LOC_Os10g32270
Target Sequence 
GATGATTCCTACTAGTGCTCTTGCTGATCCGAGGACAGATCGATGGTAGCAGCCAACTTGAAGTCGGTACGTATGTAAGT
TCGTCGTCCTGTGATCCTTGACGAAGCAAGTTGAACCAACCATTAAATAAATTAAGTTAATACACCATCTCATCTGACTG
ATGGTGTAGTAGTCTCAGTGTGCTAGCTAGTGCCAACGCATGCAAAGCTATACGCTGTGTGTGTTGTAAAGCATAAGCTA
GCTAGTCACGCTCTCAGCTGTTATTTGTCGTTCTAGCTATTTGATGCGGCATGCAGTCACGAAGACTATGCAGCTTGATA
TGTATGTCGCAGTATTAATTAGTACTATCTTAGTTGAACCTAGCTTGTCGGTTGATTTGTACTCTATGTCGCAGTACGTA
TCACTACGTACTCTGCTTCTGTCTCAGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis