Browse Element(s) Details


Os.54329.1.S1_at

Description gb:AK103393.1
DB_XREF= gi:32988602
TID=Os.54329.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127M10, full insert sequence.
FL= gb:AK105437.1 gb:AK103393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0913011/11Ligand-gated ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09080Os.46459.1.S1_at1/116+4567260..4568265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09090Os.27742.2.S1_a_at11/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09090OsAffx.4776.1.S1_s_at1/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09100OsAffx.15327.1.S1_at10/116+4576644..4577866hypothetical protein
LOC_Os06g09110OsAffx.15328.1.S1_at11/116+4582309..4584737hypothetical protein
LOC_Os06g09110OsAffx.27792.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09110Os.23021.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09120OsAffx.4776.1.S1_s_at11/116+4586798..4590084Ligand-gated ion channel family protein, expressed
LOC_Os06g09130Os.54329.1.S1_at11/116+4592917..4596946Ligand-gated ion channel family protein, expressed
LOC_Os06g09140NANA6+4603421..4604035hypothetical protein
LOC_Os06g09150NANA6+4604515..4605856transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160OsAffx.30261.2.S1_s_at11/116+4606807..4607109hypothetical protein
LOC_Os06g09170Os.53571.1.S1_at11/116+4611262..4614893Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g09180Os.49853.1.S1_a_at11/116+4615609..4617146Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54329.1.S1_at--639--5911Chr06:4593481..4593505 (25 bp)
GAGCTTCCAAGGTCTTTTCATCATT
LOC_Os06g09130
Os.54329.1.S1_at--823--10371Chr06:4593467..4593491 (25 bp)
TTTTCATCATTGTCGGGTGCCTTTT
LOC_Os06g09130
Os.54329.1.S1_at--406--4451Chr06:4593449..4593473 (25 bp)
GCCTTTTAGGTGCTGTGCTGTTGAT
LOC_Os06g09130
Os.54329.1.S1_at--292--6031Chr06:4593390..4593414 (25 bp)
GAGATGAGAGGCTTCGGTTCAGACC
LOC_Os06g09130
Os.54329.1.S1_at--458--6751Chr06:4593374..4593398 (25 bp)
GTTCAGACCGTGTCCATAGTGGCGA
LOC_Os06g09130
Os.54329.1.S1_at--959--1791Chr06:4593313..4593337 (25 bp)
ACCGCAGATTGTCATGGTCGATCGA
LOC_Os06g09130
Os.54329.1.S1_at--344--531Chr06:4593293..4593317 (25 bp)
ATCGACGATCCTGTGCCTGCTGATA
LOC_Os06g09130
Os.54329.1.S1_at--1055--4731Chr06:4593275..4593299 (25 bp)
GCTGATACCCTCCAGATTAGGACTG
LOC_Os06g09130
Os.54329.1.S1_at--394--2331Chr06:4593169..4593193 (25 bp)
AAAGTTCACTTGTTTTGGCCTGCTT
LOC_Os06g09130
Os.54329.1.S1_at--96--5011Chr06:4593141..4593165 (25 bp)
GCATGGCCTTGCTTAACTGTGTAAG
LOC_Os06g09130
Os.54329.1.S1_at--232--2571Chr06:4593127..4593151 (25 bp)
AACTGTGTAAGCCTCTTCTGTTGGT
LOC_Os06g09130
Target Sequence 
GAGCTTCCAAGGTCTTTTCATCATTGTCGGGTGCCTTTTAGGTGCTGTGCTGTTGATAAACTTTAGCAAGTTTCTATATG
ACAAATGCAAAGAGATGAGAGGCTTCGGTTCAGACCGTGTCCATAGTGGCGAGAGAGTTGTTTGTTACGGTGAAGCTCAA
CCACAACCACCGCAGATTGTCATGGTCGATCGACGATCCTGTGCCTGCTGATACCCTCCAGATTAGGACTGAAAACAAAT
AAAGAGTGTGAACAGTTATCTGCACCAACTATCCCAACTCCCAAGGCACTAGAATGGCTCTGAAGCTAGAAAAAAGTTCA
CTTGTTTTGGCCTGCTTGTTGCATGGCCTTGCTTAACTGTGTAAGCCTCTTCTGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis