Browse Element(s) Details


OsAffx.15327.1.S1_at

Description tigr:9634.m00862
TID=OsAffx.15327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0910010/11hypothetical protein
LOC_Os05g423701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09040NANA6+4550878..4552664hypothetical protein
LOC_Os06g09050OsAffx.4776.1.S1_s_at2/116+4555488..4557021hypothetical protein
LOC_Os06g09060Os.29067.2.S1_at4/116+4557431..4562454retrotransposon protein, putative, unclassified
LOC_Os06g09069NANA6+4564943..4565300NA
LOC_Os06g09080Os.46459.1.S1_at1/116+4567260..4568265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09090Os.27742.2.S1_a_at11/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09090OsAffx.4776.1.S1_s_at1/116+4570099..4573905Ligand-gated ion channel family protein, expressed
LOC_Os06g09100OsAffx.15327.1.S1_at10/116+4576644..4577866hypothetical protein
LOC_Os06g09110OsAffx.15328.1.S1_at11/116+4582309..4584737hypothetical protein
LOC_Os06g09110OsAffx.27792.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09110Os.23021.1.S1_at1/116+4582309..4584737hypothetical protein
LOC_Os06g09120OsAffx.4776.1.S1_s_at11/116+4586798..4590084Ligand-gated ion channel family protein, expressed
LOC_Os06g09130Os.54329.1.S1_at11/116+4592917..4596946Ligand-gated ion channel family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15327.1.S1_at--351--4191Chr06:4577657..4577681 (25 bp)
CCCTTAATTGCTTTCTGCGGTACAA
LOC_Os06g09100
OsAffx.15327.1.S1_at--48--232Chr01:3160051..3160075 (25 bp)
ATATTCCATCATGAGCAGGGCCCAT
NONE
OsAffx.15327.1.S1_at--340--1091Chr06:4577606..4577630 (25 bp)
AGGGCCCATTTACTCGATGCCTGGG
LOC_Os06g09100
OsAffx.15327.1.S1_at--168--4911Chr06:4577533..4577557 (25 bp)
GCTTCATCCTCGTTGCAACAGGAAG
LOC_Os06g09100
OsAffx.15327.1.S1_at--814--8951Chr06:4577494..4577518 (25 bp)
TGACAGTTTCTTTGAGAGCTCAGCT
LOC_Os06g09100
OsAffx.15327.1.S1_at--1120--1571Chr06:4577478..4577502 (25 bp)
AGCTCAGCTATACCGTTGTCTCAAT
LOC_Os06g09100
OsAffx.15327.1.S1_at--820--3731Chr05:24712475..24712894 (25 bp)
CTCAATTTTGGAAAGGGATGCCCTA
LOC_Os05g42370
OsAffx.15327.1.S1_at--997--10651Chr06:4577388..4577407 (20 bp)
TTCCGTGTTCTTTTGGAAAGCACTT
LOC_Os06g09100
OsAffx.15327.1.S1_at--660--8091Chr06:4576869..4576893 (25 bp)
GGACCTTTCTGGCTATCCTAACAGT
LOC_Os06g09100
OsAffx.15327.1.S1_at--315--10511Chr06:4576699..4576723 (25 bp)
TTCAAGTCTTTGTCCTTTGCACAGA
LOC_Os06g09100
OsAffx.15327.1.S1_at--181--9031Chr06:4576682..4576706 (25 bp)
TGCACAGAAATGGAGCATCTTGCTA
LOC_Os06g09100
Target Sequence 
CCCTTAATTGCTTTCTGCGGTACAAAAGTGATATCATATTCCATCATGAGCAGGGCCCATTTACTCGATGCCTGGGGAAT
CGACGTCATCGGCCTCATCGATCCACCTTCTTCAAGGGGGCATCGCTTCATCCTCGTTGCAACAGGAAGAAGTATTTGAG
TAATGACAGTTTCTTTGAGAGCTCAGCTATACCGTTGTCTCAATTTTGGAAAGGGATGCCCTATTTTAAGAAATGGCTGG
AAAGGTTGATTGAGAAAAAGTTTTACAATGGGGTTTCCGTGTTCTTTTGGAAAGCACTTTTTACATGGTGTATTGTCAAG
GAGGCCCTGGACCTTTCTGGCTATCCTAACAGTTTTTGGGTGGTTCAAGTCTTTGTCCTTTGCACAGAAATGGAGCATCT
TGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis