Browse Element(s) Details


Os.29067.2.S1_at

Description gb:AK110690.1
DB_XREF= gi:32995899
TID=Os.29067.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435B05.25 (P0435B05.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A03, full insert sequence.
FL= gb:AK110690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5498011/11expressed protein
LOC_Os11g076405/11hypothetical protein
LOC_Os06g090604/11retrotransposon protein, putative, unclassified
LOC_Os05g433303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29067.2.S1_at--936--1955Chr11:3891608..3891632 (25 bp)
ACTGGATCCAGGAGGTCGGTGAACC
LOC_Os11g07640
Os.29067.2.S1_at--1007--714Chr11:3891652..3891676 (25 bp)
ATGATCTGTGGCATTGGTGTCCCGT
LOC_Os11g07640
Os.29067.2.S1_at--335--8575Chr11:3891714..3891738 (25 bp)
TGGATCTGCCGCATGGAGGGCTCCT
LOC_Os11g07640
Os.29067.2.S1_at--710--9975Chr11:3891753..3891777 (25 bp)
TACCTCTTCTTCTGCCTTTTTGGAA
LOC_Os11g07640
Os.29067.2.S1_at--720--7674Chr11:3892008..3892032 (25 bp)
GGGTTCCTAGAGGATGCTGCCACCT
LOC_Os11g07640
Os.29067.2.S1_at--1045--9455Chr11:3892072..3892096 (25 bp)
TCTGGCACAGCATCTAAGGTCATCT
NONE
Os.29067.2.S1_at--338--7596Chr11:3892788..3892812 (25 bp)
GGGCATTCAGTATCAGCGCCGGAAC
NONE
Os.29067.2.S1_at--503--1533Chr11:3892829..3892853 (25 bp)
AGCAGGCGCCGTGATGTTGGATCAA
NONE
Os.29067.2.S1_at--422--6796Chr11:3892913..3892937 (25 bp)
GTTAGTAGCTGTTTGGTTTTCCATT
NONE
Os.29067.2.S1_at--1111--7876Chr11:3892927..3892951 (25 bp)
GGTTTTCCATTGTAAGCCTATATAG
NONE
Os.29067.2.S1_at--834--4436Chr11:3892942..3892966 (25 bp)
GCCTATATAGGCCATTCGGTTTAAG
NONE
Target Sequence 
ACTGGATCCAGGAGGTCGGTGAACCGATTTGGAGAGGGAGCTGCATGATCTGTGGCATTGGTGTCCCGTTTCGGACAGCG
GCGGTCTCCAGTACGGCGGGTGCTGCTGGATCTGCCGCATGGAGGGCTCCTCGTCAGCTCCATCCTACCTCTTCTTCTGC
CTTTTTGGAAGGAGCTTGTAGTGAAGCTTTGTTGAGCTTACGCAAAGCAGAGAAGGGCATCGGCGCGGGGTTCCTAGAGG
ATGCTGCCACCTCCATCCCCTTGCGTCACGGCCGTGCTGCCCTACTGGTCCTCTGGCACAGCATCTAAGGTCATCTGCCA
CCACAACCAGATGTTATGTGGGGCATTCAGTATCAGCGCCGGAACCGACGCCAACAGCCAGAGCAGGCGCCGTGATGTTG
GATCAAGTTGTTAGGATTAGTTTCAGTGATTAAGTTTGTTAGGAAGATTAAGTTGTTAGTTCCTGGTTAGTAGCTGTTTG
GTTTTCCATTGTAAGCCTATATAGGCCATTCGGTTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29067.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis