Browse Element(s) Details


Os.22713.1.S1_at

Description gb:AK067136.1
DB_XREF= gi:32977154
TID=Os.22713.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative oxidoreductase-like protein (P0435B05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095P17, full insert sequence.
FL= gb:AK061904.1 gb:AK067136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5494011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22713.1.S1_at--647--1231Chr01:31929594..31929618 (25 bp)
AGTTCGATGCCGTGTTGGATACCAT
LOC_Os01g54940
Os.22713.1.S1_at--522--8351Chr01:31929665..31929689 (25 bp)
GGCGGACACTATATGACCCTTCAGG
LOC_Os01g54940
Os.22713.1.S1_at--584--911Chr01:31929779..31929803 (25 bp)
AGGCGGCTGCCCTAGCAGATAGATA
LOC_Os01g54940
Os.22713.1.S1_at--605--9051Chr01:31929857..31929881 (25 bp)
TGCAGTACCGTTATTCTCATGGAAT
LOC_Os01g54940
Os.22713.1.S1_at--331--6011Chr01:31931056..31931080 (25 bp)
GAGAGCTGACTCTGAAGGACTTCAT
LOC_Os01g54940
Os.22713.1.S1_at--715--5371Chr01:31931128..31931152 (25 bp)
GAAGACATTTCCCATCAGCAAAGTA
LOC_Os01g54940
Os.22713.1.S1_at--667--4471Chr01:31931188..31931212 (25 bp)
GCCTGGCAAGGTGGTTTTAGAATTT
LOC_Os01g54940
Os.22713.1.S1_at--148--2611Chr01:31931253..31931277 (25 bp)
AACCGCACCTGTCTGTAAATCGTAA
LOC_Os01g54940
Os.22713.1.S1_at--507--271Chr01:31931313..31931337 (25 bp)
ATATGTATCGGTTTGTTGGCCTGAC
LOC_Os01g54940
Os.22713.1.S1_at--576--3111Chr01:31931340..31931364 (25 bp)
AATTTGGTCGTCCTGTCAAGATGCA
LOC_Os01g54940
Os.22713.1.S1_at--645--7051Chr01:31931386..31931410 (25 bp)
GTAAGCAATAACGTGAGGCCCGAAA
LOC_Os01g54940
Target Sequence 
AGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATTGGCATTAATGTTCTGAGGAGAGGCGGACAC
TATATGACCCTTCAGGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTANCTGTGGGACTTCCTGCTGNTACTGCTGT
TTTACTAAAGAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAG
GACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTA
AGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTC
TTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAA
ATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCA
ATAACGTGAGGCCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis