Browse Element(s) Details


Os.42095.1.S1_x_at

Description gb:CB634979
DB_XREF= gi:29629970
DB_XREF=OSIIEb14O05.r
CLONE=OSIIEb14O05
TID=Os.42095.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.42095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (P0435B05.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5491010/11GTP-binding protein TypA containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42095.1.S1_x_at--573--2591Chr01:31909871..31909895 (25 bp)
AACGAAGTTTTGTGAGTGCTGCTAC
LOC_Os01g54910
Os.42095.1.S1_x_at--405--7391Chr01:31909882..31909906 (25 bp)
GTGAGTGCTGCTACATTAGTCTATA
LOC_Os01g54910
Os.42095.1.S1_x_at--494--8391Chr01:31909918..31909942 (25 bp)
GGCGCAGATGCATCCTATTTATGTA
LOC_Os01g54910
Os.42095.1.S1_x_at--767--10171Chr01:31909941..31909965 (25 bp)
TATAGGTTGGCGGATAGCTTTTTCA
LOC_Os01g54910
Os.42095.1.S1_x_at--840--9991Chr01:31909955..31909979 (25 bp)
TAGCTTTTTCAAGTGCTGCCAGCGT
LOC_Os01g54910
Os.42095.1.S1_x_at--590--8351Chr01:31910134..31910158 (25 bp)
GGCGATTATACCTTTTGATAGCCTT
LOC_Os01g54910
Os.42095.1.S1_x_at--759--5451Chr01:31910175..31910199 (25 bp)
GAACGACCATAGATATTGCCCTTGA
LOC_Os01g54910
Os.42095.1.S1_x_at--1042--9151Chr01:31910191..31910215 (25 bp)
TGCCCTTGAAGGTCATAGTATTCTT
LOC_Os01g54910
Os.42095.1.S1_x_at--540--6871Chr01:31910208..31910232 (25 bp)
GTATTCTTTTCTAGTTGAGTGCTGA
LOC_Os01g54910
Os.42095.1.S1_x_at--829--4871NONE
GCTATAGTCTCTCTTGATGCTGGTT
NONE
Os.42095.1.S1_x_at--433--6351Chr01:31910258..31910282 (25 bp)
GATGCTGGTTGTTTTTGTTCACATT
LOC_Os01g54910
Target Sequence 
AACGAAGTTTTGTGAGTGCTGCTACATTAGTCTATAATAATCCAAAAGGCGCAGATGCATCCTATTTATGTATAGGTTGG
CGGATAGCTTTTTCAAGTGCTGCCAGCGTTCCTCACCATGACCCAGCATGAAAATTTTATTCAGCCGTGGGATGATAATG
ATTCNCGGCATGCTAAGAACGAATAAGCCCGTGATTGGAGCTANTGCTATAACAGAAATACAGAACAGGGTGGGTGGGCT
GGTAACATGGATTACCTNTGGAAGGCGATTATACCTTTTGATAGCCTTTTTACAGTAATTGTTGGAACGACCATAGATAT
TGCCCTTGAAGGTCATAGTATTCTTTTCTAGTTGAGTGCTGAAAAAATGACAGCTATAGTCTCTCTTGATGCTGGTTGTT
TTTGTTCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42095.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis