Browse Element(s) Details


Os.11498.1.S1_at

Description gb:AK121755.1
DB_XREF= gi:37991378
TID=Os.11498.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L18a, cytosolic (P0046E05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088C04, full insert sequence.
FL= gb:AK121755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5487011/1160S ribosomal protein L18a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11498.1.S1_at--220--6071Chr01:31886598..31886622 (25 bp)
GAGTAGGACTGGCTACCACAACATG
LOC_Os01g54870
Os.11498.1.S1_at--631--7391Chr01:31886560..31886584 (25 bp)
GTGATACCACCCTCAATGGTGCCGT
LOC_Os01g54870
Os.11498.1.S1_at--267--8611Chr01:31886544..31886568 (25 bp)
TGGTGCCGTTGAGCAGATGTACACT
LOC_Os01g54870
Os.11498.1.S1_at--287--3711Chr01:31886464..31886488 (25 bp)
CTACTGTCCACTTTAAACTCTGCAA
LOC_Os01g54870
Os.11498.1.S1_at--301--9831Chr01:31886451..31886475 (25 bp)
TAAACTCTGCAAGCGTGACAACACT
LOC_Os01g54870
Os.11498.1.S1_at--250--9791Chr01:31886427..31886451 (25 bp)
TAAGCAGTTCCACAAGTCAGATATC
LOC_Os01g54870
Os.11498.1.S1_at--913--1251Chr01:31886409..31886433 (25 bp)
AGATATCAAGTTCCCACTGGTGTAC
LOC_Os01g54870
Os.11498.1.S1_at--951--8771Chr01:31886323..31886347 (25 bp)
TGTTTATGTGATCCAAGTCGCCTTC
LOC_Os01g54870
Os.11498.1.S1_at--295--1151Chr01:31886308..31886332 (25 bp)
AGTCGCCTTCCATGTTCTGTAAGAT
LOC_Os01g54870
Os.11498.1.S1_at--254--10091Chr01:31886205..31886229 (25 bp)
TAGGTCCATGCTGCGGTCTCTCTAG
LOC_Os01g54870
Os.11498.1.S1_at--1162--7151Chr01:31886190..31886214 (25 bp)
GTCTCTCTAGGTTCTCGTATCGTAT
LOC_Os01g54870
Target Sequence 
GAGTAGGACTGGCTACCACAACATGTACAAGGAGTACCGTGATACCACCCTCAATGGTGCCGTTGAGCAGATGTACACTG
AGATGGCTTCCCGCCACCGTGTCAGATTCCCTTGCATTCAGATCATCAAGACTGCTACTGTCCACTTTAAACTCTGCAAG
CGTGACAACACTAAGCAGTTCCACAAGTCAGATATCAAGTTCCCACTGGTGTACAGGAAGGTCAGGCCCCCTACCAGGAA
GCTGAAGACAACCTTCAAAGCTTCAAGGCCNAACTTGTTTATGTGATCCAAGTCGCCTTCCATGTTCTGTAAGATCTGCC
AGTATGGTGTAGTCGTAGTTCAGAACTTAAGATGAATCTTATCCATATGAAGCCTGTTTTTGAAAAGTTCTGNTAGGTCC
ATGCTGCGGTCTCTCTAGGTTCTCGTATCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis