Browse Element(s) Details


Os.6033.1.S1_at

Description gb:AK069590.1
DB_XREF= gi:32979614
TID=Os.6033.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019I11, full insert sequence.
FL= gb:AK069590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5486011/113-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54820NANA1+31856613..31859835hypothetical protein
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006574biological_processvaline catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6033.1.S1_at--993--2332Chr07:17686677..17686939 (25 bp)
AAACCAATGGATCGCTACAGTACTG
NONE
Os.6033.1.S1_at--990--2871Chr01:31880764..31880788 (25 bp)
AAGGGCATGCGAAGATCATCTCCTA
LOC_Os01g54860
Os.6033.1.S1_at--1052--1271Chr01:31880752..31880776 (25 bp)
AGATCATCTCCTACTTCACTGAAGA
LOC_Os01g54860
Os.6033.1.S1_at--265--3431Chr01:31880444..31880468 (25 bp)
CAGAGCCTGCCGGAATGTTTGAAGA
LOC_Os01g54860
Os.6033.1.S1_at--787--2471Chr01:31880399..31880423 (25 bp)
AACACTCTCCGATCTGTAGTTACTG
LOC_Os01g54860
Os.6033.1.S1_at--286--3031Chr01:31880152..31880254 (25 bp)
AATGCCCCTAAGTGGAGTCCTGCTA
LOC_Os01g54860
Os.6033.1.S1_at--857--5811Chr01:31880098..31880122 (25 bp)
GACCGTCTTTTCGAACCATTCAGTT
LOC_Os01g54860
Os.6033.1.S1_at--418--211Chr01:31879915..31879939 (25 bp)
ATTTGAGCACACAGTCTATGGCAGA
LOC_Os01g54860
Os.6033.1.S1_at--898--731Chr01:31879862..31879886 (25 bp)
ATGTTCATCATCCTCACAAGCATGT
LOC_Os01g54860
Os.6033.1.S1_at--478--2391Chr01:31879834..31879858 (25 bp)
AAGTACTCGTAACCCCATGTATTCT
LOC_Os01g54860
Os.6033.1.S1_at--873--3511Chr01:31879819..31879843 (25 bp)
CATGTATTCTCATACTTCCCTGTAT
LOC_Os01g54860
Target Sequence 
AAACCAATGGATCGCTACAGTACTGAAGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGATCA
GAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCCGACTTACAATGAACACTCTCCGATCTGTAGTT
ACTGGCGATGTCTATGAGGGAATTAGAGCTCTCAGCATCGACAAAGACAATGCCCCTAAGTGGAGTCCTGCTACCCTTGA
GGAGGTCAAGAACGAGGACATCGACCGTCTTTTCGAACCATTCAGTTCAGAAAAGGAGCTCCAAGTCCCATCTGACGATT
CCAACAGATGGAGTGGCAAATTTGAGCACACAGTCTATGGCAGAACTTCAGAGTAATTGGCAGCAGAAATAGATGTTCAT
CATCCTCACAAGCATGTTTTAAGTACTCGTAACCCCATGTATTCTCATACTTCCCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis