Browse Element(s) Details


Os.9361.1.S1_s_at

Description gb:NM_191921.1
DB_XREF= gi:34910925
GEN=OSJNBb0063G05.8
TID=Os.9361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9361 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 60S ribosomal protein L18A (OSJNBb0063G05.8), mRNA.
PROD=putative 60S ribosomal protein L18A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4766011/1160S ribosomal protein L18a, putative, expressed
LOC_Os05g490302/1160S ribosomal protein L18a, putative, expressed
LOC_Os01g548701/1160S ribosomal protein L18a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein
LOC_Os01g47680OsAffx.11509.1.S1_at11/111+27598232..27600753expressed protein
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9361.1.S1_s_at--682--5912Chr05:28035261..28035389 (25 bp)
GAGCACCCCAAGATCTACCGGATGA
LOC_Os05g49030
Os.9361.1.S1_s_at--1026--1271Chr01:27595026..27595050 (25 bp)
AGATCTACCGGATGAAGCTCTGGGC
LOC_Os01g47660
Os.9361.1.S1_s_at--599--8891Chr01:27594995..27595019 (25 bp)
TGAGGTCCGCGCCAAGAGCAAGTTC
LOC_Os01g47660
Os.9361.1.S1_s_at--938--1292Chr05:28035459..28035598 (25 bp)
AGATGCTCGCCATCAACGAGATCTT
LOC_Os05g49030
Os.9361.1.S1_s_at--521--5472Chr01:31886625..31886649 (25 bp)
GAACTATGGCATCTGGCTGCGTTAC
LOC_Os01g54870
Os.9361.1.S1_s_at--133--5251Chr01:27593945..27593969 (25 bp)
GAACCGGTTACCACAACATGTACAA
LOC_Os01g47660
Os.9361.1.S1_s_at--298--8031Chr01:27593920..27593944 (25 bp)
GGAGTACCGTGACACTACATTGAAT
LOC_Os01g47660
Os.9361.1.S1_s_at--1009--6571Chr01:27593846..27593870 (25 bp)
GATTCCCTTGCATCCAGATCATCAA
LOC_Os01g47660
Os.9361.1.S1_s_at--363--7271Chr01:27593811..27593835 (25 bp)
GTCCACTTCAAGCTCTGCAAGAGGG
LOC_Os01g47660
Os.9361.1.S1_s_at--866--1511Chr01:27593777..27593801 (25 bp)
AGCAGTTCCACAACGGGAGCATCAA
LOC_Os01g47660
Os.9361.1.S1_s_at--799--7371Chr01:27593742..27593766 (25 bp)
GTGTACCGCAAGGTCAGGCCGCCAA
LOC_Os01g47660
Target Sequence 
GAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGTTCATCTTATCT
CGTGCGGTTTGCTGATTGGGGCGCTTGCCCGGTGTGCAGGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACG
GCCAGATGCTCGCCATCAACGAGATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGTTACCAG
AGCAGAACCGGTTACCACAACATGTACAAGGAGTACCGTGACACTACATTGAATGGTGCCGTGGAACAGATGTACACCGA
GATGGCTTCTCGCCACCGTGTGAGATTCCCTTGCATCCAGATCATCAAGACCGCCACTGTCCACTTCAAGCTCTGCAAGA
GGGACAACACCAAGCAGTTCCACAACGGGAGCATCAAGTTCCCCCTTGTGTACCGCAAGGTCAGGCCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9361.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis