Browse Element(s) Details


Os.36185.2.S1_at

Description gb:NM_191926.1
DB_XREF= gi:34910935
GEN=OSJNBb0063G05.13
TID=Os.36185.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0063G05.13 (OSJNBb0063G05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0063G05.13 (OSJNBb0063G05.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4771010/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein
LOC_Os01g47680OsAffx.11509.1.S1_at11/111+27598232..27600753expressed protein
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47720OsAffx.21516.2.S1_at11/111+27626870..27627196hypothetical protein
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0010075biological_processregulation of meristem size
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36185.2.S1_at--188--1191NONE
AGTTTCAAGGTCTCGCGGATTTCGG
NONE
Os.36185.2.S1_at--309--2891Chr01:27615882..27615905 (24 bp)
AAGGTCTCGCGGATTTCGGGCTCGT
LOC_Os01g47710
Os.36185.2.S1_at--458--7171Chr01:27615879..27615903 (25 bp)
GTCTCGCGGATTTCGGGCTCGTCGC
LOC_Os01g47710
Os.36185.2.S1_at--758--7571Chr01:27615803..27615827 (25 bp)
GGGCAGTTCCGTGGCCGCGGTTGTG
LOC_Os01g47710
Os.36185.2.S1_at--1004--7911Chr01:27615785..27615809 (25 bp)
GGTTGTGTGCGTCAGCGTCGCGGGC
LOC_Os01g47710
Os.36185.2.S1_at--264--8411Chr01:27615737..27615761 (25 bp)
GGCCGCGCACTTCAACGTGAGGCAC
LOC_Os01g47710
Os.36185.2.S1_at--188--2051Chr01:27615729..27615753 (25 bp)
ACTTCAACGTGAGGCACTACGGCGA
LOC_Os01g47710
Os.36185.2.S1_at--75--5911Chr01:27615697..27615721 (25 bp)
GAGCTGCTCCGCTACAGAGGAGGCA
LOC_Os01g47710
Os.36185.2.S1_at--953--9091Chr01:27615693..27615717 (25 bp)
TGCTCCGCTACAGAGGAGGCAGCCG
LOC_Os01g47710
Os.36185.2.S1_at--486--991Chr01:27615680..27615704 (25 bp)
AGGAGGCAGCCGCACGGAGCCTGTG
LOC_Os01g47710
Os.36185.2.S1_at--1051--5851Chr01:27615664..27615688 (25 bp)
GAGCCTGTGCCCGTCGACGAGTCGG
LOC_Os01g47710
Target Sequence 
AGTTTCAAGGTCTCGCGGATTTCGGGCTCGTCGCCGGCGCCTGCTCCGGCGCCGGAGCCGCCGCCGCCGCCGCCGCGCCC
GAGGCGGGCAGTTCCGTGGCCGCGGTTGTGTGCGTCAGCGTCGCGGGCGCCGCGCCGCCGCTCTTCTACCCGGCCGCGCA
CTTCAACGTGAGGCACTACGGCGACGAGGCCGAGCTGCTCCGCTACAGAGGAGGCAGCCGCACGGAGCCTGTGCCCGTCG
ACGAGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36185.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis