Browse Element(s) Details


OsAffx.11509.1.S1_at

Description tigr:9629.m04577
TID=OsAffx.11509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4768011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein
LOC_Os01g47680OsAffx.11509.1.S1_at11/111+27598232..27600753expressed protein
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11509.1.S1_at--441--5271Chr01:27599344..27599368 (25 bp)
GAATGCGACGCCTTCCATTTTGCGG
LOC_Os01g47680
OsAffx.11509.1.S1_at--544--3591Chr01:27599329..27599353 (25 bp)
CATTTTGCGGCCTTGGCATGGGCTG
LOC_Os01g47680
OsAffx.11509.1.S1_at--360--3511Chr01:27599229..27599337 (25 bp)
CATGGGCTGGTTCCTGTTTATCATT
LOC_Os01g47680
OsAffx.11509.1.S1_at--122--6711Chr01:27599220..27599328 (25 bp)
GTTCCTGTTTATCATTGGCTTCTTC
LOC_Os01g47680
OsAffx.11509.1.S1_at--967--3791Chr01:27599195..27599219 (25 bp)
CTCGCTGCCATTCCATGGTATATTG
LOC_Os01g47680
OsAffx.11509.1.S1_at--628--3671Chr01:27599167..27599191 (25 bp)
CTTTTGTTTTGATATGCGTCCGAGT
LOC_Os01g47680
OsAffx.11509.1.S1_at--960--6491Chr01:27599157..27599181 (25 bp)
GATATGCGTCCGAGTACATGATTAC
LOC_Os01g47680
OsAffx.11509.1.S1_at--152--10131Chr01:27599120..27599141 (22 bp)
TATGTTGCTTGCACTATTGCGGCTT
LOC_Os01g47680
OsAffx.11509.1.S1_at--852--71Chr01:27598621..27599080 (25 bp)
ATTGCGGCTTCGCTTGCTGCCATTG
LOC_Os01g47680
OsAffx.11509.1.S1_at--1095--10711Chr01:27598608..27598632 (25 bp)
TTGCTGCCATTGCTATCCTGCTTGG
LOC_Os01g47680
OsAffx.11509.1.S1_at--419--71Chr01:27598600..27598624 (25 bp)
ATTGCTATCCTGCTTGGTGTCACAA
LOC_Os01g47680
Target Sequence 
GAATGCGACGCCTTCCATTTTGCGGCCTTGGCATGGGCTGGTTCCTGTTTATCATTGGCTTCTTCCTCGCTGCCATTCCA
TGGTATATTGGAGCTTTTGTTTTGATATGCGTCCGAGTACATGATTACAGGGAGAAACCAGGATATGTTGCTTGCACTAT
TGCGGCTTCGCTTGCTGCCATTGCTATCCTGCTTGGTGTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis