Browse Element(s) Details


Os.45930.1.A1_at

Description gb:NM_191920.1
DB_XREF= gi:34910923
GEN=OSJNBb0063G05.7
TID=Os.45930.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45930 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative vacuolar protein sorting protein (OSJNBb0063G05.7), mRNA.
PROD=putative vacuolar protein sorting protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g476507/11vacuoleless1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein
LOC_Os01g47680OsAffx.11509.1.S1_at11/111+27598232..27600753expressed protein
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45930.1.A1_at--129--2831Chr01:27592086..27592110 (25 bp)
AAGTTGACAGATCCTCGTGAACGAT
LOC_Os01g47650
Os.45930.1.A1_at--178--5391Chr01:27592878..27592902 (25 bp)
GAAGCAGCTTCACAGGTCAAAGATA
LOC_Os01g47650
Os.45930.1.A1_at--652--7391Chr01:27592903..27592927 (25 bp)
GTGATGAGCTATTTGGTCGCCTAAA
LOC_Os01g47650
Os.45930.1.A1_at--889--8571Chr01:27592916..27592940 (25 bp)
TGGTCGCCTAAAGCTTACACTTGCA
LOC_Os01g47650
Os.45930.1.A1_at--60--10491Chr01:27592930..27592954 (25 bp)
TTACACTTGCACAGAACACAGCCGC
LOC_Os01g47650
Os.45930.1.A1_at--6--4211Chr01:27592951..27592975 (25 bp)
CCGCGGCTTCTATTTTCGATACATT
LOC_Os01g47650
Os.45930.1.A1_at--460--7971Chr01:27592979..27593003 (25 bp)
GGATCGACTATCCTTCCAAGGGACA
LOC_Os01g47650
Os.45930.1.A1_at--1032--5831Chr01:27593008..27593032 (25 bp)
GACCTATACGTGTTTGGCCATGGGA
NONE
Os.45930.1.A1_at--30--10711NONE
TTGAGTTTTGTGCATCCTTGGTACG
NONE
Os.45930.1.A1_at--436--9231Chr01:27593049..27593072 (24 bp)
TCCTTGGTACGTGCAATTGCGCAAT
NONE
Os.45930.1.A1_at--1006--7431NONE
GTGTACCGACTCCACAAGTGTGAAT
NONE
Target Sequence 
AAGTTGACAGATCCTCGTGAACGATCTGAGGCATATGCACGGATCAAGATGGCAAAGGAAGCTGCAGAAGCAGCTTCACA
GGTCAAAGATAGTGATGAGCTATTTGGTCGCCTAAAGCTTACACTTGCACAGAACACAGCCGCGGCTTCTATTTTCGATA
CATTGCGGGATCGACTATCCTTCCAAGGGACATACTGACCTATACGTGTTTGGCCATGGGATTTGAGTTTTGTGCATCCT
TGGTACGTGCAATTGCGCAATCAGATCGTATCAATTCATCTTGATGTTTCTACCATTTTCTTCCTTGTGTACCGACTCCA
CAAGTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45930.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis