Browse Element(s) Details


Os.32834.1.S1_at

Description gb:AK102689.1
DB_XREF= gi:32987898
TID=Os.32834.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0063G05.4 (OSJNBb0063G05.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102P10, full insert sequence.
FL= gb:AK102689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4762011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein
LOC_Os01g47580Os.15706.1.S1_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.1.S1_a_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.2.S1_x_at8/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32834.1.S1_at--816--10591Chr01:27571439..27571463 (25 bp)
TTCGATCATGTCTATGAGCCTCGGC
LOC_Os01g47620
Os.32834.1.S1_at--277--5871Chr01:27571424..27571448 (25 bp)
GAGCCTCGGCAACCAGAGAGCCAGA
LOC_Os01g47620
Os.32834.1.S1_at--314--6571Chr01:27571361..27571385 (25 bp)
GATTCTATGTCAAGTGCCAAACCAG
LOC_Os01g47620
Os.32834.1.S1_at--551--4391Chr01:27571346..27571370 (25 bp)
GCCAAACCAGTAGGCCTTGGTCGAA
LOC_Os01g47620
Os.32834.1.S1_at--540--3611Chr01:27571331..27571355 (25 bp)
CTTGGTCGAACTGGCACTACTATTG
LOC_Os01g47620
Os.32834.1.S1_at--723--1351Chr01:27571304..27571328 (25 bp)
AGAGATGAGCACAAGCGCTTTGTAA
LOC_Os01g47620
Os.32834.1.S1_at--592--4351Chr01:27570496..27570520 (25 bp)
CCAGCTAGCTAGTCCAGGTTTTGTA
LOC_Os01g47620
Os.32834.1.S1_at--867--7871Chr01:27570480..27570504 (25 bp)
GGTTTTGTATGTCCTCACTTATGTC
LOC_Os01g47620
Os.32834.1.S1_at--470--2051Chr01:27570464..27570488 (25 bp)
ACTTATGTCCTGTAGCAGCCTTAGT
LOC_Os01g47620
Os.32834.1.S1_at--982--4111Chr01:27570446..27570470 (25 bp)
CCTTAGTAGTTTCATGGCAATTCAT
LOC_Os01g47620
Os.32834.1.S1_at--931--2451Chr01:27570330..27570354 (25 bp)
AACAATGTTGTTTCTACAGCATGTA
LOC_Os01g47620
Target Sequence 
TTCGATCATGTCTATGAGCCTCGGCAACCAGAGAGCCAGAGTGTTATTGACAGGGCAGAACCAGAAAATGACAATGATGA
TTCTATGTCAAGTGCCAAACCAGTAGGCCTTGGTCGAACTGGCACTACTATTGACAGAGATGAGCACAAGCGCTTTGTAA
GGGAGGTTCATGAGGAAGTAAGTGAGGCAAGGCAGAAGGCTTCAACAATGAAATCCCGACGACAAGAGCAGGAGGCTGCT
CGTAGAGAGAAACTCAAGCAGGCTTATTTGAAGAAACGCCTGGAGAAGTTACTTGCTGAGAAACGGGCCACTTCAGCAAC
CGACGACCAACCAGCTAGCTAGTCCAGGTTTTGTATGTCCTCACTTATGTCCTGTAGCAGCCTTAGTAGTTTCATGGCAA
TTCATCATGAGTTTTCCTTTGAAAGTGGTTCTTTGATTTAGCAGAACCAAATTCAGAAAACGTTGTCATGTAAAGTTGTT
TCTACAGTTTGATTCAAACAATGTTGTTTCTACAGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis