Browse Element(s) Details


OsAffx.11507.1.S1_at

Description tigr:9629.m04566
TID=OsAffx.11507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4757011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein
LOC_Os01g47580Os.15706.1.S1_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.1.S1_a_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.2.S1_x_at8/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11507.1.S1_at--236--4771Chr01:27548164..27548188 (25 bp)
GCTGCTGCGGCTGCCAGATTTAAAC
LOC_Os01g47570
OsAffx.11507.1.S1_at--350--4771Chr01:27548167..27548191 (25 bp)
GCTGCGGCTGCCAGATTTAAACCAA
LOC_Os01g47570
OsAffx.11507.1.S1_at--899--9131Chr01:27548169..27548193 (25 bp)
TGCGGCTGCCAGATTTAAACCAATT
LOC_Os01g47570
OsAffx.11507.1.S1_at--554--3891Chr01:27548171..27548195 (25 bp)
CGGCTGCCAGATTTAAACCAATTCT
LOC_Os01g47570
OsAffx.11507.1.S1_at--962--10711Chr01:27548247..27548271 (25 bp)
TTGCTTGTGGTTAATTAGTTCGATC
LOC_Os01g47570
OsAffx.11507.1.S1_at--500--7511Chr01:27548253..27548277 (25 bp)
GTGGTTAATTAGTTCGATCGTGTTG
LOC_Os01g47570
OsAffx.11507.1.S1_at--564--9391Chr01:27548266..27548290 (25 bp)
TCGATCGTGTTGTAAATCTGCGCCC
LOC_Os01g47570
OsAffx.11507.1.S1_at--148--511Chr01:27548269..27548293 (25 bp)
ATCGTGTTGTAAATCTGCGCCCTTA
LOC_Os01g47570
OsAffx.11507.1.S1_at--996--3971Chr01:27548271..27548295 (25 bp)
CGTGTTGTAAATCTGCGCCCTTAAT
LOC_Os01g47570
OsAffx.11507.1.S1_at--323--8751Chr01:27548273..27548297 (25 bp)
TGTTGTAAATCTGCGCCCTTAATTA
LOC_Os01g47570
OsAffx.11507.1.S1_at--1015--2251Chr01:27548279..27548303 (25 bp)
AAATCTGCGCCCTTAATTAAATCCG
LOC_Os01g47570
Target Sequence 
GCTGCTGCGGCTGCCAGATTTAAACCAATTCTGCTCGCCGCAGCTGGCCGCGTTCGTAACCATCATGCATGTATGTAATT
TTTTTGCTTGTGGTTAATTAGTTCGATCGTGTTGTAAATCTGCGCCCTTAATTAAATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis