Browse Element(s) Details


Os.28828.1.S2_at

Description gb:AY341844.1
DB_XREF= gi:33519175
TID=Os.28828.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28828 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
PROD=WRKY3
FL= gb:AK111013.1 gb:AY341844.1 gb:AY341855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4756011/11WRKY DNA binding domain containing protein, expressed
LOC_Os05g491001/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28828.1.S2_at--277--531Chr01:27523922..27523946 (25 bp)
ATCGACGTGCTGAGCAGCTTCCTGC
LOC_Os01g47560
Os.28828.1.S2_at--344--4551Chr01:27523883..27523907 (25 bp)
GCCCACCACGGCATGACTACGATGG
LOC_Os01g47560
Os.28828.1.S2_at--308--1871Chr01:27523835..27523859 (25 bp)
ACGAGCCATGGCCTTAACAGTGCAA
LOC_Os01g47560
Os.28828.1.S2_at--1061--871Chr01:27523828..27523852 (25 bp)
ATGGCCTTAACAGTGCAATCAGCGG
LOC_Os01g47560
Os.28828.1.S2_at--206--5052Chr05:28074246..28074640 (25 bp)
GCAGCACTTCATGGCGCAAGACTTG
LOC_Os05g49100
Os.28828.1.S2_at--1145--2751Chr01:27523702..27523726 (25 bp)
AAGACTTGGGCCTCCTGCAGGACAT
LOC_Os01g47560
Os.28828.1.S2_at--1035--5772Chr06:29932789..29932812 (23 bp)
GACGACCACCATCAATCTGAAGCTG
NONE
Os.28828.1.S2_at--1129--5191Chr01:27523610..27523634 (25 bp)
GAATTAATCATCAGACTAGCTAGAC
LOC_Os01g47560
Os.28828.1.S2_at--389--6151Chr01:27523583..27523607 (25 bp)
GAGGTCATTTGGCTCTCGATCGATC
LOC_Os01g47560
Os.28828.1.S2_at--460--4051Chr01:27523567..27523591 (25 bp)
CGATCGATCATGCTGTTTAATTAAT
LOC_Os01g47560
Os.28828.1.S2_at--207--3151Chr01:27523545..27523569 (25 bp)
AATTAACATCTCGTTACATCTTTTT
LOC_Os01g47560
Target Sequence 
ATCGACGTGCTGAGCAGCTTCCTGCCGCGCGCCGCCGCCGCCCACCACGGCATGACTACGATGGGCGGCGCCGCGGCGAC
GACGACGACGAGCCATGGCCTTAACAGTGCAATCAGCGGCGGAGGCGGCGTCTCGAGCGAGACGACGAGCGCGGTCACCG
TCGCCGCCTCGGCTCAGCCGTCGTCACCGGCGGCGCTCCAGATGCAGCACTTCATGGCGCAAGACTTGGGCCTCCTGCAG
GACATGCTGCTGCCGTCCTTCATCCACGGCACCAACCAGCCTTGACGCGACGACCACCATCAATCTGAAGCTGAATTAAT
CATCAGACTAGCTAGACAAGAGGTCATTTGGCTCTCGATCGATCATGCTGTTTAATTAATTAACATCTCGTTACATCTTT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28828.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis