Browse Element(s) Details


Os.14999.3.S1_x_at

Description gb:NM_191904.1
DB_XREF= gi:34910891
GEN=P0003E08.13
TID=Os.14999.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14999 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mitogen-activated protein kinase (P0003E08.13), mRNA.
PROD=putative mitogen-activated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4753010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14999.3.S1_x_at--563--951Chr01:27503652..27503675 (24 bp)
AGGAAACATGTTTCGCTCCCAAGGA
LOC_Os01g47530
Os.14999.3.S1_x_at--225--2031Chr01:27503942..27503966 (25 bp)
ACTACTACAGTTCATTCTGCTCCAA
LOC_Os01g47530
Os.14999.3.S1_x_at--993--7571Chr01:27504120..27504144 (25 bp)
GGGCTTGCCCTGTAATACCATTTGA
LOC_Os01g47530
Os.14999.3.S1_x_at--248--5571Chr01:27504286..27504310 (25 bp)
GAAAGATCGCATGCGGTACCAGCCA
LOC_Os01g47530
Os.14999.3.S1_x_at--510--7851Chr01:27504300..27504324 (25 bp)
GGTACCAGCCATCAGAGCATTTCAT
LOC_Os01g47530
Os.14999.3.S1_x_at--956--7731Chr01:27504334..27504358 (25 bp)
GGTGGTGTCACATATGTCCCATGAT
LOC_Os01g47530
Os.14999.3.S1_x_at--434--8712Chr01:27504348..27504372 (25 bp)
TGTCCCATGATTTGAGAGCTTCCTC
LOC_Os01g47530
Os.14999.3.S1_x_at--649--1551Chr01:27504364..27504388 (25 bp)
AGCTTCCTCTTACTACGTTTCAAAG
LOC_Os01g47530
Os.14999.3.S1_x_at--824--5891Chr01:27504411..27504435 (25 bp)
GAGCTGCCTTACAATCCAACATGAT
LOC_Os01g47530
Os.14999.3.S1_x_at--89--4771NONE
GCTGCAGTTGGAGGATTGTCAGAAC
NONE
Os.14999.3.S1_x_at--156--5831Chr01:27505165..27505189 (25 bp)
GACCGCACCACTAACTACTGAGATG
LOC_Os01g47530
Target Sequence 
AGGAAACATGTTTCGCTCCCAAGGACTACTACAGTTCATTCTGCTCCAATTCCTCCCAAAGATCATCAAAATATAACTTC
CCAAGTACCCCAAAGGATTCCAGGTAGAACAGGACGAGGGGCTTGCCCTGTAATACCATTTGAGAATTTGAGTGCAATGG
GCCCATACAATCAACGAAGGGTGGTAAGGAATCCAGTGCTTCCTCCAGCCACCACCAACCTATCAGCATATGCCTACCAC
CGTAAATCGGATAGCTCAGAAAGAGAGCTCCAGCAGGAGCTTGAGAAAGATCGCATGCGGTACCAGCCATCAGAGCATTT
CATGGATGCTAAGGTGGTGTCACATATGTCCCATGATTTGAGAGCTTCCTCTTACTACGTTTCAAAGGCGAAATCTGATG
TAGCAGACAGAGCTGCCTTACAATCCAACATGATGCAGGGAATTGGCCCTTTTAATGGCATTGCTGCAGTTGGAGGATTG
TCAGAACTGACCGCACCACTAACTACTGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14999.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis