Browse Element(s) Details


Os.14999.2.S1_at

Description gb:AK072082.1
DB_XREF= gi:32982105
TID=Os.14999.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitogen-activated protein kinase (P0003E08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116M16, full insert sequence.
FL= gb:AK072082.1 gb:AK061663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4753011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14999.2.S1_at--1062--2991Chr01:27505086..27505110 (25 bp)
AATGAACTGTTTGCTTCTCTTAGAG
LOC_Os01g47530
Os.14999.2.S1_at--395--5471Chr01:27505089..27505113 (25 bp)
GAACTGTTTGCTTCTCTTAGAGTGA
LOC_Os01g47530
Os.14999.2.S1_at--247--1971Chr01:27505091..27505115 (25 bp)
ACTGTTTGCTTCTCTTAGAGTGATG
LOC_Os01g47530
Os.14999.2.S1_at--788--9511Chr01:27505101..27505125 (25 bp)
TCTCTTAGAGTGATGGGAAATGATA
LOC_Os01g47530
Os.14999.2.S1_at--1035--911Chr01:27505208..27505232 (25 bp)
AGGCTTACAGCATGAGCAGTACCTG
LOC_Os01g47530
Os.14999.2.S1_at--321--3411Chr01:27505215..27505239 (25 bp)
CAGCATGAGCAGTACCTGTAGACCA
LOC_Os01g47530
Os.14999.2.S1_at--896--5931Chr01:27505221..27505245 (25 bp)
GAGCAGTACCTGTAGACCAGAGTTC
LOC_Os01g47530
Os.14999.2.S1_at--343--6971Chr01:27505226..27505250 (25 bp)
GTACCTGTAGACCAGAGTTCAAACA
LOC_Os01g47530
Os.14999.2.S1_at--1160--8731Chr01:27505231..27505255 (25 bp)
TGTAGACCAGAGTTCAAACATGAAT
LOC_Os01g47530
Os.14999.2.S1_at--79--2111Chr01:27505248..27505272 (25 bp)
ACATGAATTAGGTGGTATCGTGCTT
LOC_Os01g47530
Os.14999.2.S1_at--13--10451Chr01:27505255..27505279 (25 bp)
TTAGGTGGTATCGTGCTTCAAATGC
LOC_Os01g47530
Target Sequence 
AATGAACTGTTTGCTTCTCTTAGAGTGATGGGAAATGATAGTGAATTGATGTTACTTGTGTTTTAGGATTGTCAGAACTG
ACCGCACCACTAACTACTGAGATGTATTTGGTTAACGGTTACAGGCTTACAGCATGAGCAGTACCTGTAGACCAGAGTTC
AAACATGAATTAGGTGGTATCGTGCTTCAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14999.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis