Browse Element(s) Details


Os.41790.1.S1_x_at

Description gb:CF311565
DB_XREF= gi:33683326
DB_XREF=ABF--06-N06.g1
CLONE=ABF--06-N06
TID=Os.41790.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003E08.9 (P0003E08.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4749011/11negatively light-regulated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41790.1.S1_x_at--1054--2291Chr01:27474835..27474859 (25 bp)
AAAGGGCCTCTTGAAGCACTTCGAC
LOC_Os01g47490
Os.41790.1.S1_x_at--754--9891Chr01:27475322..27475346 (25 bp)
TACTCAACAACATGCACGTGCTCGG
LOC_Os01g47490
Os.41790.1.S1_x_at--445--1111Chr01:27475471..27475495 (25 bp)
AGTGTATGAATTTGCCTCCTGAGGA
LOC_Os01g47490
Os.41790.1.S1_x_at--385--1171Chr01:27475543..27475567 (25 bp)
AGTAACGAGTAGCTGCACCCTGTCT
LOC_Os01g47490
Os.41790.1.S1_x_at--331--1811Chr01:27475559..27475583 (25 bp)
ACCCTGTCTATTTGGAGCGTTGCCA
LOC_Os01g47490
Os.41790.1.S1_x_at--302--10031Chr01:27475623..27475647 (25 bp)
TAGAGCCAATGCCTACACTTGTGGG
LOC_Os01g47490
Os.41790.1.S1_x_at--172--7911Chr01:27475647..27475671 (25 bp)
GGTTGAGCTCTGCAGTGTTTAACTT
LOC_Os01g47490
Os.41790.1.S1_x_at--555--9531Chr01:27475698..27475722 (25 bp)
TCTACCACATTCAGCTGTTCAGTGT
LOC_Os01g47490
Os.41790.1.S1_x_at--1000--3451Chr01:27475717..27475741 (25 bp)
CAGTGTCTTTCTGGCATCTGTAACA
LOC_Os01g47490
Os.41790.1.S1_x_at--465--7411Chr01:27475771..27475795 (25 bp)
GTGATACCGATGCTGTAGTACCTGA
LOC_Os01g47490
Os.41790.1.S1_x_at--258--9771Chr01:27475812..27475836 (25 bp)
TAATGCTTCAAATTCAGCTCCCCAT
LOC_Os01g47490
Target Sequence 
AAAGGGCCTCTTGAAGCACTTCGACCAAAACTTCAGCCTACTCAACAACATGCACGTGCTCGGCGGACTCCCTATGCATC
TGCTGACAATGATGAGTGTATGAATTTGCCTCCTGAGGATTTGATCCAGAATGGTGATCCCATCGAAGACAAGAACAAGG
AAGAACAGTAACGAGTAGCTGCACCCTGTCTATTTGGAGCGTTGCCAATCCTGTCCTCGAGCCAAACTGTTGCCTTGGTA
AATAACTAGAGCCAATGCCTACACTTGTGGGGTTGAGCTCTGCAGTGTTTAACTTAAACGTAAGACGTGGTATGTCTGGC
GTCTACCACATTCAGCTGTTCAGTGTCTTTCTGGCATCTGTAACAGCTAGGAATGAAAACTTACATATGATGCTGTGATA
CCGATGCTGTAGTACCTGATGTGCAAAGAAACAAATAATGCTTCAAATTCAGCTCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41790.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis