Browse Element(s) Details


Os.53251.1.S1_at

Description gb:AK071583.1
DB_XREF= gi:32981606
TID=Os.53251.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104C01, full insert sequence.
FL= gb:AK071583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4749011/11negatively light-regulated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53251.1.S1_at--504--3111Chr01:27473296..27473320 (25 bp)
AATATGAACTCTTCTTGAGCTGAAA
LOC_Os01g47490
Os.53251.1.S1_at--1146--651Chr01:27473327..27473351 (25 bp)
ATGCAATGTATGCATCCCCTGTTTC
LOC_Os01g47490
Os.53251.1.S1_at--434--6851Chr01:27473347..27473371 (25 bp)
GTTTCCTCTTTTCCTCTGATTGAAT
LOC_Os01g47490
Os.53251.1.S1_at--556--5411Chr01:27473470..27473494 (25 bp)
GAAGCTGGTATTAGTCTCCTTATTT
LOC_Os01g47490
Os.53251.1.S1_at--1158--10111Chr01:27473499..27473523 (25 bp)
TATGTACTTCTGCTTTCTTCTATTG
LOC_Os01g47490
Os.53251.1.S1_at--517--471Chr01:27473547..27473571 (25 bp)
ATCTGCCTTTTATTCTGTTTCTTTT
LOC_Os01g47490
Os.53251.1.S1_at--232--8911Chr01:27473574..27473598 (25 bp)
TGAGAAACTTTTACCACCCTCATGG
LOC_Os01g47490
Os.53251.1.S1_at--611--7551Chr01:27473597..27473621 (25 bp)
GGGCCATCAAATACATTATCTTCCT
LOC_Os01g47490
Os.53251.1.S1_at--425--6251Chr01:27473637..27473661 (25 bp)
GATGGTTAGCGCATACTGTGTGCTA
LOC_Os01g47490
Os.53251.1.S1_at--248--9551Chr01:27473671..27473695 (25 bp)
TCTTTGCACCATGAGCGTGGACACT
LOC_Os01g47490
Os.53251.1.S1_at--424--5631Chr01:27473690..27473714 (25 bp)
GACACTGAAATTGAAGTCTTCTCTG
LOC_Os01g47490
Target Sequence 
AATATGAACTCTTCTTGAGCTGAAAATAAACATGCAATGTATGCATCCCCTGTTTCCTCTTTTCCTCTGATTGAATGCTT
AACAAGCTTACAGTGACAAACAGTGAGTCGGCATAAATTTTGGTACAGTTGAGAAGTTCTTGTGTTGGACATATCCCTCC
TCCCCTAGAAATAAGAAGCTGGTATTAGTCTCCTTATTTATTTTATGTACTTCTGCTTTCTTCTATTGCATAAAGGAAGG
GAACAATAAACATCTGCCTTTTATTCTGTTTCTTTTTCTGAGAAACTTTTACCACCCTCATGGGCCATCAAATACATTAT
CTTCCTTTTTTGTGTATGTTAGATGGTTAGCGCATACTGTGTGCTATTAAATGATTCTTTGCACCATGAGCGTGGACACT
GAAATTGAAGTCTTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis