Browse Element(s) Details


Os.33575.1.S1_at

Description gb:AK100061.1
DB_XREF= gi:32985270
TID=Os.33575.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003E08.6 (P0003E08.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160C18, full insert sequence.
FL= gb:AK100061.1 gb:AK066072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4747011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47440NANA1+27439698..27440354hypothetical protein
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33575.1.S1_at--781--7211Chr01:27457868..27457892 (25 bp)
GTCGATGTCGAGTCACAGCAATCTG
LOC_Os01g47470
Os.33575.1.S1_at--986--6031Chr01:27457838..27457862 (25 bp)
GAGATCTCAAACAGTGCCGATTCCT
LOC_Os01g47470
Os.33575.1.S1_at--1009--6551Chr01:27457820..27457844 (25 bp)
GATTCCTGAGGCTCCAATGCTGAAC
LOC_Os01g47470
Os.33575.1.S1_at--568--3591Chr01:27457765..27457789 (25 bp)
CATTATCCTGTCTGGTTTGGTCAAA
LOC_Os01g47470
Os.33575.1.S1_at--1011--4611Chr01:27457673..27457697 (25 bp)
GCATAGGAATCGTTCGTTTCCCTTT
LOC_Os01g47470
Os.33575.1.S1_at--856--2851Chr01:27457622..27457646 (25 bp)
AAGTGCTTCTATGCTCCCCTAAAAT
LOC_Os01g47470
Os.33575.1.S1_at--221--3111Chr01:27457600..27457624 (25 bp)
AATATCCGCCGTACTATGTTTTCTG
LOC_Os01g47470
Os.33575.1.S1_at--1035--6931Chr01:27457576..27457600 (25 bp)
GTAGATGAGTCCTCCAACTCGTTTA
LOC_Os01g47470
Os.33575.1.S1_at--564--3371Chr01:27457510..27457534 (25 bp)
CACCTTCTTCATCTATACCGTTTAA
LOC_Os01g47470
Os.33575.1.S1_at--365--8731Chr01:27457425..27457449 (25 bp)
TGTAAAGAACCCTTGTCGATCCTCA
LOC_Os01g47470
Os.33575.1.S1_at--924--7211Chr01:27457411..27457435 (25 bp)
GTCGATCCTCAGTTTTACCATGAAG
LOC_Os01g47470
Target Sequence 
GTCGATGTCGAGTCACAGCAATCTGCGGAGGAGATCTCAAACAGTGCCGATTCCTGAGGCTCCAATGCTGAACAGATACA
GAAAATAGGACATGNAAACATTTCATTATCCTGTCTGGTTTGGTCAAATATTCAATATAGTTCAATACCGTGATTGCAAC
AGGTTTACATTTAGCAAAGACTGGAAGACATAAAGGCATAGGAATCGTTCGTTTCCCTTTCTTTTCTTCTTCTTCTTCTT
TTCGAGAAGTGCTTCTATGCTCCCCTAAAATATCCGCCGTACTATGTTTTCTGTAGATGAGTCCTCCAACTCGTTTACTC
TACGATATGTGTAGTTTTGTTTTAGGGGAGCACAGAAGCACCTTCTTCATCTATACCGTTTAAGTTATCAGGAGGAGCTG
ACCTCGAAGGCATGAATGACTAGTAACCAGATTTTGTTACCCTTGTAAAGAACCCTTGTCGATCCTCAGTTTTACCATGA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis