Browse Element(s) Details


Os.14874.2.S1_x_at

Description gb:NM_191895.1
DB_XREF= gi:34910873
GEN=P0003E08.3
TID=Os.14874.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0671D01.27 (P0671D01.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0003E08.3 (P0003E08.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47440NANA1+27439698..27440354hypothetical protein
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14874.2.S1_x_at--279--8891Chr01:27434669..27434693 (25 bp)
TGAGGTCTTCTAGCAAGCCTGTGGC
LOC_Os01g47430
Os.14874.2.S1_x_at--46--2471Chr01:27434641..27434665 (25 bp)
AACAGACAACGCCTATTCTGGCCAA
LOC_Os01g47430
Os.14874.2.S1_x_at--6--3291Chr01:27434619..27434643 (25 bp)
CAAACCTCATCTTTCTCAAGTGTGG
LOC_Os01g47430
Os.14874.2.S1_x_at--497--8792Chr02:32877988..32878224 (25 bp)
TGTTCTTCAAGATCCTATTCCTCAA
NONE
Os.14874.2.S1_x_at--691--3451Chr01:27434494..27434518 (25 bp)
CAGTCATGCTTCTGCTGATAACCAT
LOC_Os01g47430
Os.14874.2.S1_x_at--883--3131Chr01:27434417..27434441 (25 bp)
AATTAACAGTCCCTGAGACATCCCG
LOC_Os01g47430
Os.14874.2.S1_x_at--210--551Chr01:27434398..27434422 (25 bp)
ATCCCGTGACATATCTTTACCTGTG
LOC_Os01g47430
Os.14874.2.S1_x_at--371--10471Chr01:27434382..27434406 (25 bp)
TTACCTGTGGCATCTTTGGAATCAT
LOC_Os01g47430
Os.14874.2.S1_x_at--587--2571Chr01:27434356..27434380 (25 bp)
AACGTTGGTTGCTGACGATGCGAAC
LOC_Os01g47430
Os.14874.2.S1_x_at--214--1371Chr01:27434306..27434330 (25 bp)
AGAGCAGCTCAGCTATACCTTCTGA
LOC_Os01g47430
Os.14874.2.S1_x_at--1161--2851Chr01:27434221..27434245 (25 bp)
AAGTGCATACCAGTCTCGAGGGAAT
LOC_Os01g47430
Target Sequence 
TGAGGTCTTCTAGCAAGCCTGTGGCTTCAACAGACAACGCCTATTCTGGCCAAACCTCATCTTTCTCAAGTGTGGTAAAC
CAGAACCCAAACAAATCTGCAAGCACTGCCCCACCAACAACATTTGAGCAAAGATTTCCTGTTCTTCAAGATCCTATTCC
TCAAGTTAAGAATTCCAGTCATGCTTCTGCTGATAACCATGAGACACAAGAGAGTGATTGGTTTCAACAGGATGGGACAC
TACCAGGGAGTCAATTAACAGTCCCTGAGACATCCCGTGACATATCTTTACCTGTGGCATCTTTGGAATCATCAACGTTG
GTTGCTGACGATGCGAACTCGTATAATAATTCTCATGTAGGAGAGAGCAGCTCAGCTATACCTTCTGATAGACACCTGGA
AATTATTGATGGCAACAACCATTTTAATAATGGTTTATTGCACAACTCAAGTGCATACCAGTCTCGAGGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14874.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis