Browse Element(s) Details


Os.50635.1.S1_at

Description gb:NM_192504.1
DB_XREF= gi:34912091
GEN=P0671D01.25
TID=Os.50635.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50635 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative aspartic protease (P0671D01.25), mRNA.
PROD=putative aspartic protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4741010/11Aspartic proteinase oryzasin-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47440NANA1+27439698..27440354hypothetical protein
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50635.1.S1_at--228--8691Chr01:27414395..27414419 (25 bp)
TGTGCAATGCTTGTGAGACAGCTGT
LOC_Os01g47410
Os.50635.1.S1_at--890--7331Chr01:27414394..27414418 (25 bp)
GTGCAATGCTTGTGAGACAGCTGTT
LOC_Os01g47410
Os.50635.1.S1_at--745--9011Chr01:27414393..27414417 (25 bp)
TGCAATGCTTGTGAGACAGCTGTTG
LOC_Os01g47410
Os.50635.1.S1_at--551--5191Chr01:27414392..27414416 (25 bp)
GCAATGCTTGTGAGACAGCTGTTGT
LOC_Os01g47410
Os.50635.1.S1_at--1014--3191Chr01:27414391..27414415 (25 bp)
CAATGCTTGTGAGACAGCTGTTGTA
LOC_Os01g47410
Os.50635.1.S1_at--867--3011Chr01:27414390..27414414 (25 bp)
AATGCTTGTGAGACAGCTGTTGTAT
LOC_Os01g47410
Os.50635.1.S1_at--419--631Chr01:27414389..27414413 (25 bp)
ATGCTTGTGAGACAGCTGTTGTATG
LOC_Os01g47410
Os.50635.1.S1_at--453--9071Chr01:27414388..27414412 (25 bp)
TGCTTGTGAGACAGCTGTTGTATGG
LOC_Os01g47410
Os.50635.1.S1_at--528--4931Chr01:27414387..27414411 (25 bp)
GCTTGTGAGACAGCTGTTGTATGGA
LOC_Os01g47410
Os.50635.1.S1_at--708--3611Chr01:27414386..27414410 (25 bp)
CTTGTGAGACAGCTGTTGTATGGAT
LOC_Os01g47410
Target Sequence 
TGTGCAATGCTTGTGAGACAGCTGTTGTATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis