Browse Element(s) Details


Os.10006.1.S1_at

Description gb:AK071667.1
DB_XREF= gi:32981690
TID=Os.10006.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mannan endo-1,4-beta-mannosidase (P0671D01.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105N15, full insert sequence.
FL= gb:AK071667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4740010/11mannan endo-1,4-beta-mannosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10006.1.S1_at--793--6591Chr01:27412169..27412193 (25 bp)
GATTGACCGCTGATTAGGCCCAGAA
LOC_Os01g47400
Os.10006.1.S1_at--212--2931Chr01:27412213..27412237 (25 bp)
AAGGCTTGGTTTGATTTGTGTGTTT
LOC_Os01g47400
Os.10006.1.S1_at--392--8671Chr01:27412229..27412253 (25 bp)
TGTGTGTTTTACTTCATGTGTGGGA
LOC_Os01g47400
Os.10006.1.S1_at--334--7471Chr01:27412263..27412287 (25 bp)
GTGTGAGTTGATGGCTCCTCGAGAT
LOC_Os01g47400
Os.10006.1.S1_at--480--8331Chr01:27412275..27412299 (25 bp)
GGCTCCTCGAGATGATTTAAGATTC
LOC_Os01g47400
Os.10006.1.S1_at--1008--551Chr01:27412328..27412352 (25 bp)
ATCCTTCTTGGTGCCTTGGGAGGAC
LOC_Os01g47400
Os.10006.1.S1_at--1003--8531Chr01:27412380..27412404 (25 bp)
TGGACCACGAAGTAGCCACTCTGTG
LOC_Os01g47400
Os.10006.1.S1_at--37--5331Chr01:27412407..27412431 (25 bp)
GAAGTTTTATGGTACCTGGCTATGG
LOC_Os01g47400
Os.10006.1.S1_at--718--5411Chr01:27412434..27412458 (25 bp)
GAAGCCAGCCAGTGATTACAAATTA
LOC_Os01g47400
Os.10006.1.S1_at--360--3131Chr01:27412454..27412478 (25 bp)
AATTACTTACGTACTTCACACTAGT
LOC_Os01g47400
Os.10006.1.S1_at--354--4311NONE
CCTATATGAATGATGTTTTGCTGGC
NONE
Target Sequence 
GATTGACCGCTGATTAGGCCCAGAAAGTGGTAGTAAAAGAAAGAAAGGCTTGGTTTGATTTGTGTGTTTTACTTCATGTG
TGGGAGGTACGTGAGTGTGAGTTGATGGCTCCTCGAGATGATTTAAGATTCATCCGGGAGAGAAGGATTAGTATTTGTCA
TCCTTCTTGGTGCCTTGGGAGGACGNGTGTTTTTAGGTGTTCTTAATTATGTGGACCACGAAGTAGCCACTCTGTGGTGA
AGTTTTATGGTACCTGGCTATGGAAGAAGCCAGCCAGTGATTACAAATTACTTACGTACTTCACACTAGTATAATACTCC
TATATGAATGATGTTTTGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis