Browse Element(s) Details


Os.17029.1.S1_at

Description gb:AK060072.1
DB_XREF= gi:32970090
TID=Os.17029.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A12, full insert sequence.
FL= gb:AK058452.1 gb:AK060072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4742011/11pterin-4-alpha-carbinolamine dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47440NANA1+27439698..27440354hypothetical protein
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004160molecular_functiondihydroxy-acid dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17029.1.S1_at--1068--2871Chr01:27425295..27425319 (25 bp)
AAGGGCTTGAATTCCTTCAGCTTGT
LOC_Os01g47420
Os.17029.1.S1_at--562--2111Chr01:27426867..27426891 (25 bp)
ACAGTCCAAAAGTAGTTCGCGCAGA
LOC_Os01g47420
Os.17029.1.S1_at--238--6051Chr01:27426912..27426936 (25 bp)
GAGATTTATGTACTTGCTTCGGTTA
LOC_Os01g47420
Os.17029.1.S1_at--866--4871Chr01:27426971..27426995 (25 bp)
GCTTTTCTTGAATTTGTACCGGGAG
LOC_Os01g47420
Os.17029.1.S1_at--247--10231Chr01:27426983..27427007 (25 bp)
TTTGTACCGGGAGTTTCTCTGTTCT
LOC_Os01g47420
Os.17029.1.S1_at--100--10431Chr01:27427017..27427041 (25 bp)
TTACCAATGCTGTTGGACCGGGTCT
LOC_Os01g47420
Os.17029.1.S1_at--124--5831Chr01:27427032..27427056 (25 bp)
GACCGGGTCTACTTCTGTTACAGAA
LOC_Os01g47420
Os.17029.1.S1_at--27--6771Chr01:27427048..27427072 (25 bp)
GTTACAGAATGTCGAGAACCACCAT
LOC_Os01g47420
Os.17029.1.S1_at--1100--5431Chr01:27427093..27427117 (25 bp)
GAACCTGTTTCTCTTACATGTGGGC
LOC_Os01g47420
Os.17029.1.S1_at--255--8451Chr01:27427115..27427139 (25 bp)
GGCCAAGAGATGTAGGGTCCACGAA
LOC_Os01g47420
Os.17029.1.S1_at--173--5471Chr01:27427137..27427161 (25 bp)
GAACATTTTAGAGTCCACCACACCT
LOC_Os01g47420
Target Sequence 
AAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTGTTGCTGAGGAAGAAGGCCNACCNACCCTGATCTTCATCTTGTCGGTT
GGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATC
AATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTC
TGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGT
ACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCTACTTCTGTTACAGAATGTCGAGAACC
ACCATAATCTAGATTTGATCAAGGAGAACCTGTTTCTCTTACATGTGGGCCAAGAGATGTAGGGTCCACGAACATTTTAG
AGTCCACCACACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis