Browse Element(s) Details


Os.41793.1.S1_at

Description gb:NM_191896.1
DB_XREF= gi:34910875
GEN=P0003E08.4
TID=Os.41793.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41793 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative carboxy-terminal proteinase D1-like protein (P0003E08.4), mRNA.
PROD=putative carboxy-terminal proteinase D1-likeprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4745011/11carboxyl-terminal protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47440NANA1+27439698..27440354hypothetical protein
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
GO:0005739cellular_componentmitochondrion
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41793.1.S1_at--13--2571Chr01:27444485..27444509 (25 bp)
AACTGTGGTCCTGTTGAGCCATTGA
LOC_Os01g47450
Os.41793.1.S1_at--204--1351Chr01:27444516..27444540 (25 bp)
AGAGACAACTGGTTGCTCGCACACC
LOC_Os01g47450
Os.41793.1.S1_at--411--5111Chr01:27444534..27444558 (25 bp)
GCACACCAGTTTTCTATCGATTGGA
LOC_Os01g47450
Os.41793.1.S1_at--579--10351Chr01:27445968..27445992 (25 bp)
TTTATACTGCTGGTCGTGATCGTCA
LOC_Os01g47450
Os.41793.1.S1_at--221--2031Chr01:27446033..27446445 (25 bp)
ACTACTCCTCTTATGGTACTTGTGA
LOC_Os01g47450
Os.41793.1.S1_at--1056--10031Chr01:27446553..27446575 (23 bp)
TAGTTGCTTCAGCACTTCATGACAA
LOC_Os01g47450
Os.41793.1.S1_at--936--1971Chr01:27446575..27446599 (25 bp)
ACTGCAAAGCTGTTCTGGTCGGTGA
LOC_Os01g47450
Os.41793.1.S1_at--62--5351Chr01:27446697..27446718 (22 bp)
GAAAGGGCTTAATCCAGTCCGTATT
LOC_Os01g47450
Os.41793.1.S1_at--896--2511Chr01:27446721..27446745 (25 bp)
AACTTCATGACGGTTCTGGCATTGT
LOC_Os01g47450
Os.41793.1.S1_at--996--3911Chr01:27446736..27446760 (25 bp)
CTGGCATTGTCGTCACAGTGGGCAA
LOC_Os01g47450
Os.41793.1.S1_at--923--1791Chr01:27446814..27446918 (25 bp)
ACCGCCGCATTCCTGATTTCAATGA
LOC_Os01g47450
Target Sequence 
AACTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAG
AGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGCTAAAAGTTA
CTGTTCATGGATACTACATCAAAATGAAGGTGATTTATACTGCTGGTCGTGATCGTCAAGTACAAAATACAATTGTTGCT
GAAAGGGAACCTTTGGTTACTACTCCTCTTATGGTACTTGTGAATAACAGGACAGCAAGTGCCAGTGAAATAGTTGCTTC
AGCACTTCATGACAACTGCAAAGCTGTTCTGGTCGGTGAAAAAACTTTTGGAAAGGGCTTAATCCAGTCCGTATTTGAAC
TTCATGACGGTTCTGGCATTGTCGTCACAGTGGGCAAGTATGTGACACCAAATCACAAAGACATAAATGGAAATGGCATA
GAACCAGACTACCGCCGCATTCCTGATTTCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis