Browse Element(s) Details


Os.27161.1.S1_at

Description gb:AK065234.1
DB_XREF= gi:32975252
TID=Os.27161.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003E08.5 (P0003E08.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H17, full insert sequence.
FL= gb:AK065234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4746011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47440NANA1+27439698..27440354hypothetical protein
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27161.1.S1_at--589--731Chr01:27455636..27455660 (25 bp)
ATGTTGATGGCATACCGGGAGCGCA
LOC_Os01g47460
Os.27161.1.S1_at--817--5231Chr01:27455661..27455685 (25 bp)
GAATACTCCATACGCTTTTGGCTTG
LOC_Os01g47460
Os.27161.1.S1_at--344--3671Chr01:27455675..27455699 (25 bp)
CTTTTGGCTTGTTTGCAGGACTTCT
LOC_Os01g47460
Os.27161.1.S1_at--7--3491Chr01:27455690..27455714 (25 bp)
CAGGACTTCTCTTCTTTGTAGGCTT
LOC_Os01g47460
Os.27161.1.S1_at--477--931Chr01:27455730..27455754 (25 bp)
AGGAATACTCTATCTTGGGTTACAA
LOC_Os01g47460
Os.27161.1.S1_at--177--1011Chr01:27455801..27455825 (25 bp)
AGGATCTTGTTTCAGCGTTCCAGCA
LOC_Os01g47460
Os.27161.1.S1_at--714--1071Chr01:27455851..27455875 (25 bp)
AGGGAAGGTCTCAGCCGGCACAGCT
LOC_Os01g47460
Os.27161.1.S1_at--119--1591Chr01:27455872..27455896 (25 bp)
AGCTCGTCTCCTAAGTCATCATCGG
LOC_Os01g47460
Os.27161.1.S1_at--112--7131Chr01:27455886..27455910 (25 bp)
GTCATCATCGGCCTCTAATGTAGAC
LOC_Os01g47460
Os.27161.1.S1_at--179--5691Chr01:27455908..27455932 (25 bp)
GACTACGTTCTAATTTCTTAAGGCT
LOC_Os01g47460
Os.27161.1.S1_at--614--4851Chr01:27456147..27456171 (25 bp)
GCTACGGATATACTTGTGACTGGGA
LOC_Os01g47460
Target Sequence 
ATGTTGATGGCATACCGGGAGCGCAGAATACTCCATACGCTTTTGGCTTGTTTGCAGGACTTCTCTTCTTTGTAGGCTTC
GTCCTTATTGGGGTAGGAATACTCTATCTTGGGTTACAAAATCCAGTGACCAATGAGAAGGTCAAGGTGAGGAAGCTCGA
GCTCCAGGATCTTGTTTCAGCGTTCCAGCATGAAGCAGAACAGCACGGCAAGGTGAGGGAAGGTCTCAGCCGGCACAGCT
CGTCTCCTAAGTCATCATCGGCCTCTAATGTAGACTACGTTCTAATTTCTTAAGGCTGTGAAATTAATCCCCTTGTGGGA
GGGATTCACTGAACAAGGCCTAAAAGGGATTGGAAAAAGAATAAAGTACAAGGAGATTTGACAGAAAAAAAAAAGGATTT
CCGGATAGAAGAGTTCTTGGTAAGGACTAAAGTATAAGCCATATAAGTATATAACTATGTTTGGTGATCTGTATAGAGGT
TTAGATTAGAGTATAATGGTTAACTTGATATGCTACGGATATACTTGTGACTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis