Browse Element(s) Details


OsAffx.19265.1.S1_at

Description tigr:9639.m03655
TID=OsAffx.19265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g475001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47460Os.27161.1.S1_at11/111+27450336..27456209expressed protein
LOC_Os01g47470Os.33575.1.S1_at11/111+27457389..27461042Protein kinase domain containing protein, expressed
LOC_Os01g47480NANA1+27469124..27469357hypothetical protein
LOC_Os01g47490Os.53251.1.S1_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47490Os.41790.1.S1_x_at11/111+27471790..27475875negatively light-regulated protein, putative, expressed
LOC_Os01g47500OsAffx.9323.1.S1_at9/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_at5/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.24662.1.S1_x_at3/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.18095.1.S1_x_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47500OsAffx.19265.1.S1_at1/111+27478840..27480106hypothetical protein
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19265.1.S1_at--108--5071Chr11:23355497..23355521 (25 bp)
GCAGCTTCCGCGACCAAACTCGGGA
NONE
OsAffx.19265.1.S1_at--426--6031Chr11:23354962..23354985 (24 bp)
GAGATGCTGGCGAATGCTTTGCCGT
NONE
OsAffx.19265.1.S1_at--64--9193Chr05:468030..468391 (25 bp)
TGCCTTTGGCCAGTTCGACAACGAT
NONE
OsAffx.19265.1.S1_at--1083--5611Chr11:23354922..23354946 (25 bp)
GACAACGATGATGCCCGTGGGCGCT
NONE
OsAffx.19265.1.S1_at--990--9591Chr11:23354864..23354886 (23 bp)
TCATATCGCCACAATCTCCAGGTTG
NONE
OsAffx.19265.1.S1_at--740--7911Chr11:23353928..23353952 (25 bp)
GGTTGACGAATCCATTACTACTCAT
NONE
OsAffx.19265.1.S1_at--588--2011Chr11:23353909..23353933 (25 bp)
ACTCATAACCTTACAGTCCTAGACC
NONE
OsAffx.19265.1.S1_at--793--1111Chr11:23353895..23353919 (25 bp)
AGTCCTAGACCCATCTGAAGATCGA
NONE
OsAffx.19265.1.S1_at--182--8131Chr11:23353866..23353890 (25 bp)
TGAAAAACCGTAGCTTGTCCCAAGT
NONE
OsAffx.19265.1.S1_at--515--4471Chr11:23353854..23353878 (25 bp)
GCTTGTCCCAAGTAAATTCCAACCA
NONE
OsAffx.19265.1.S1_at--852--551Chr11:23353827..23353851 (25 bp)
ATCCTCTGAAGCTTAAAGGTGACGC
NONE
Target Sequence 
GCAGCTTCCGCGACCAAACTCGGGACGGCTCCGGCCAGATCTGGCGGGCTGCCTGGAGACCGGCGGCAGGCAGGGGCGGC
GTCGCGGTGGGCGGGCGTCAGATTCGCGGCTGGCAGCGGCGGCTCGCTCGCGCCGAGATGCTGGCGAATGCTTTGCCGTG
CCTTTGGCCAGTTCGACAACGATGATGCCCGTGGGCGCTGTTTCCCTTCTTGGAGGCGTTGTCATGGCGTTCTTTCATAT
CGCCACAATCTCCAGGTTGACGAATCCATTACTACTCATAACCTTACAGTCCTAGACCCATCTGAAGATCGAATCATGAA
AAACCGTAGCTTGTCCCAAGTAAATTCCAACCAAAATCCTCTGAAGCTTAAAGGTGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis