Browse Element(s) Details


Os.28828.1.S1_at

Description gb:AK111013.1
DB_XREF= gi:32996222
TID=Os.28828.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003E08.17 (P0003E08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-F12, full insert sequence.
FL= gb:AK111013.1 gb:AY341844.1 gb:AY341855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4756011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28828.1.S1_at--503--4531Chr01:27526675..27526699 (25 bp)
GCCCCACGTGCCAGCGATGGAGGCA
LOC_Os01g47560
Os.28828.1.S1_at--324--8711Chr01:27526609..27526633 (25 bp)
TGTCGGTCGCCGCAACGTCTGAATG
LOC_Os01g47560
Os.28828.1.S1_at--964--7231Chr01:27526604..27526628 (25 bp)
GTCGCCGCAACGTCTGAATGTTCGA
LOC_Os01g47560
Os.28828.1.S1_at--322--2591Chr01:27526601..27526620 (20 bp)
AACGTCTGAATGTTCGACCGCGCGA
LOC_Os01g47560
Os.28828.1.S1_at--459--4651Chr01:27525989..27526013 (25 bp)
GCGTGCTAGAGCCAAGAACCACGAG
LOC_Os01g47560
Os.28828.1.S1_at--184--2751Chr01:27525976..27526000 (25 bp)
AAGAACCACGAGCACGGCCAGCGTC
LOC_Os01g47560
Os.28828.1.S1_at--438--7971Chr01:27525935..27525959 (25 bp)
GGATCCGGCTATGTCGGGCGAGTAC
LOC_Os01g47560
Os.28828.1.S1_at--620--8571Chr01:27525832..27525856 (25 bp)
TGGTTCGCCGACTACCTGCAGGCGG
LOC_Os01g47560
Os.28828.1.S1_at--1144--8091Chr01:27525807..27525831 (25 bp)
GGACGCCGATGCAGATGGACTACGA
LOC_Os01g47560
Os.28828.1.S1_at--286--6231Chr01:27525794..27525818 (25 bp)
GATGGACTACGACCTGATGTGCCGC
LOC_Os01g47560
Os.28828.1.S1_at--358--1871Chr01:27525786..27525810 (25 bp)
ACGACCTGATGTGCCGCGCGCTGGA
LOC_Os01g47560
Target Sequence 
GCCCCACGTGCCAGCGATGGAGGCAGGCGCCGTGGGGTGGTCAAAGGGGGCGCGGGGACGGACACGTGTCGGTCGCCGCA
ACGTCTGAATGTTCGACCGCGCGAGAGAGAGAGGGTGCGTGCGTGCGTGCGTGCTAGAGCCAAGAACCACGAGCACGGCC
AGCGTCGGCGAGAGGCGGCGGTGGATCCGGCTATGTCGGGCGAGTACCAGTTCCAGGACGAGCTGGCGCCGCTGTTCGCG
CGGCCGGGGGGCGGCGCGGGGGAGATGCAGATGCTGCCGTCGTCGTGGTTCGCCGACTACCTGCAGGCGGGGACGCCGAT
GCAGATGGACTACGACCTGATGTGCCGCGCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis