Browse Element(s) Details


Os.4879.1.S1_a_at

Description gb:AK065097.1
DB_XREF= gi:32975115
TID=Os.4879.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003E08.15 (P0003E08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001M16, full insert sequence.
FL= gb:AK065097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4755011/11kinase, pfkB family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4879.1.S1_a_at--1156--7631Chr01:27516974..27516998 (25 bp)
GGGAGCCGATCAGGCAGCCGATAAT
LOC_Os01g47550
Os.4879.1.S1_a_at--601--1671Chr01:27516989..27517013 (25 bp)
AGCCGATAATTCCTGCCACAGAAGT
LOC_Os01g47550
Os.4879.1.S1_a_at--698--1231Chr01:27517011..27517035 (25 bp)
AGTTGTTGATACGACTGGTGCCGGT
LOC_Os01g47550
Os.4879.1.S1_a_at--697--6471Chr01:27517018..27517042 (25 bp)
GATACGACTGGTGCCGGTGACACTT
LOC_Os01g47550
Os.4879.1.S1_a_at--197--7371Chr01:27517034..27517058 (25 bp)
GTGACACTTTCACCTCAGCTTTTGC
LOC_Os01g47550
Os.4879.1.S1_a_at--991--3391Chr01:27517049..27517073 (25 bp)
CAGCTTTTGCTGTAGCTCTAGTTGA
LOC_Os01g47550
Os.4879.1.S1_a_at--235--6111Chr01:27517090..27517218 (25 bp)
GAGTGCATGAGATTTGCTGCTGCTG
LOC_Os01g47550
Os.4879.1.S1_a_at--780--4771Chr01:27517215..27517239 (25 bp)
GCTGCTGCATCTCTATGTGTTCAAG
LOC_Os01g47550
Os.4879.1.S1_a_at--152--9851Chr01:27517240..27517264 (25 bp)
TAAAGGGAGCCATACCCAGCATGCC
LOC_Os01g47550
Os.4879.1.S1_a_at--28--4351Chr01:27517255..27517279 (25 bp)
CCAGCATGCCTGACCGAAAATCAGT
LOC_Os01g47550
Os.4879.1.S1_a_at--191--1691Chr01:27517341..27517364 (24 bp)
AGCCTCCATTCATCCTCAATAATGG
LOC_Os01g47550
Target Sequence 
GGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCT
TTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCA
AGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGTAANTGGACCTTNTGGAATCTGTTCAGGTTGAATAACTG
TAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4879.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis