Browse Element(s) Details


OsAffx.9318.1.S1_at

Description gb:NM_191913.1
DB_XREF= gi:34910909
GEN=P0003E08.22
TID=OsAffx.9318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0003E08.22 (P0003E08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g475701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein
LOC_Os01g47580Os.15706.1.S1_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.1.S1_a_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.2.S1_x_at8/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9318.1.S1_at--671--8351Chr01:27548099..27548190 (25 bp)
GGCGTTCCGCGTGATATTTAAACCA
LOC_Os01g47570
OsAffx.9318.1.S1_at--903--351Chr01:27548359..27548383 (25 bp)
ATAATTGGGTTGGTGTTCGTCGATC
NONE
OsAffx.9318.1.S1_at--964--10611Chr01:27548374..27548398 (25 bp)
TTCGTCGATCGTGCGTACATCCATA
NONE
OsAffx.9318.1.S1_at--605--2091Chr01:27548390..27548414 (25 bp)
ACATCCATACGTGTTCTCGGTGGAC
NONE
OsAffx.9318.1.S1_at--425--7731Chr01:27548408..27548432 (25 bp)
GGTGGACGCGACTGCTCAACAGATT
NONE
OsAffx.9318.1.S1_at--483--1251Chr01:27548428..27548452 (25 bp)
AGATTGATGCCTCTAGATTGCTCTA
NONE
OsAffx.9318.1.S1_at--795--1251Chr01:27548442..27548466 (25 bp)
AGATTGCTCTAGACCTTGCCGGCTG
NONE
OsAffx.9318.1.S1_at--529--7231NONE
GTCCCTCGACGGTAGTGGTTTGGCT
NONE
OsAffx.9318.1.S1_at--236--8591Chr01:27550029..27550053 (25 bp)
TGGTTTGGCTCATCGCGCGATCGGC
NONE
OsAffx.9318.1.S1_at--506--8251Chr01:27550051..27550075 (25 bp)
GGCAGCGCCAGTACCAGTAAACAAC
NONE
OsAffx.9318.1.S1_at--382--2191Chr01:27550071..27550095 (25 bp)
ACAACAAAAGCGCATGACATTTCTC
NONE
Target Sequence 
GGCGTTCCGCGTGATATTTAAACCAATTCTGCTCGCCGCAGCTGGCCGCGTTCGTAACCATCATGCATCTGAGATAATTG
GGTTGGTGTTCGTCGATCGTGCGTACATCCATACGTGTTCTCGGTGGACGCGACTGCTCAACAGATTGATGCCTCTAGAT
TGCTCTAGACCTTGCCGGCTGTGGCGTGCACCGTGGTCCCTCGACGGTAGTGGTTTGGCTCATCGCGCGATCGGCAGCGC
CAGTACCAGTAAACAACAAAAGCGCATGACATTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis