Browse Element(s) Details


OsAffx.9317.1.S1_x_at

Description gb:NM_191915.1
DB_XREF= gi:34910913
GEN=OSJNBb0063G05.2
TID=OsAffx.9317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0063G05.2 (OSJNBb0063G05.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g476007/11HMG box family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein
LOC_Os01g47580Os.15706.1.S1_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.1.S1_a_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.2.S1_x_at8/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9317.1.S1_x_at--533--3871Chr01:27561841..27561865 (25 bp)
CTGTCATGCAAGTCATCGCCGCTCG
NONE
OsAffx.9317.1.S1_x_at--795--351Chr01:27561923..27561944 (22 bp)
ATAAGCTCACATTCGGATCCAGCGG
NONE
OsAffx.9317.1.S1_x_at--211--1391Chr01:27563484..27563508 (25 bp)
AGACGGCGCCGAAGCCGCTGAAAAC
LOC_Os01g47600
OsAffx.9317.1.S1_x_at--50--4591Chr01:27563500..27563524 (25 bp)
GCTGAAAACGGTGCGGCTGCCTCCT
LOC_Os01g47600
OsAffx.9317.1.S1_x_at--619--2571Chr01:27563506..27563530 (25 bp)
AACGGTGCGGCTGCCTCCTGTCAAG
LOC_Os01g47600
OsAffx.9317.1.S1_x_at--470--4171NONE
CGCCTTCTTCTACTTCATGGAGGAT
NONE
OsAffx.9317.1.S1_x_at--455--10571NONE
TTCTACTTCATGGAGGATTTTCGGA
NONE
OsAffx.9317.1.S1_x_at--660--3011Chr01:27564723..27564747 (25 bp)
AATCCAAGTGTAAAATCAATGCAAG
LOC_Os01g47600
OsAffx.9317.1.S1_x_at--737--5331Chr01:27566309..27566333 (25 bp)
GAAGTATTATGATATAGCAACCGAG
LOC_Os01g47600
OsAffx.9317.1.S1_x_at--436--1491Chr01:27566324..27566348 (25 bp)
AGCAACCGAGAAGCGTGCAGAGTAT
LOC_Os01g47600
OsAffx.9317.1.S1_x_at--35--5251Chr01:27566351..27566375 (25 bp)
GAAGGCGGTGGCTGAATTTGACAAG
LOC_Os01g47600
Target Sequence 
CTGTCATGCAAGTCATCGCCGCTCGCCACCATGGTCATCACCACTCTCCACAGCAAATCCAGCGAGCTCGCGGCGAGATC
TGATAAGCTCACATTCGGATCCAGCGGCGGAGGGATGAAGACGAGGTCGCAGACGGCGCCGAAGCCGCTGAAAACGGTGC
GGCTGCCTCCTGTCAAGCCGCGGCCCAAGCCGCCGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGGCAGCCC
CTCGTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGGAAAACTTACAAGGA
AGAAAATCCAAGTGTAAAATCAATGCAAGAAGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATG
AGAAGGCGGTGGCTGAATTTGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9317.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis