Browse Element(s) Details


Os.52073.1.S1_at

Description gb:AK064663.1
DB_XREF= gi:32974681
TID=Os.52073.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A10, full insert sequence.
FL= gb:AK064663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4760011/11HMG box family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47570OsAffx.11507.1.S1_at11/111+27547641..27548333expressed protein
LOC_Os01g47570OsAffx.9318.1.S1_at1/111+27547641..27548333expressed protein
LOC_Os01g47580Os.15706.1.S1_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.1.S1_a_at11/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47580Os.15706.2.S1_x_at8/111+27553023..27557140Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g47600Os.52073.1.S1_at11/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47600OsAffx.9317.1.S1_x_at7/111+27563367..27566722HMG box family protein, expressed
LOC_Os01g47610OsAffx.11508.1.S1_at11/111+27567143..27569358lipase class 3 family protein, putative, expressed
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52073.1.S1_at--17--7351Chr01:27566515..27566539 (25 bp)
GTGAACGTCGGGTAGTTGTTCCGAT
LOC_Os01g47600
Os.52073.1.S1_at--269--6871Chr01:27566526..27566550 (25 bp)
GTAGTTGTTCCGATGGTTCACCCAA
LOC_Os01g47600
Os.52073.1.S1_at--328--6491Chr01:27566532..27566556 (25 bp)
GTTCCGATGGTTCACCCAAGTAATT
LOC_Os01g47600
Os.52073.1.S1_at--325--6891Chr01:27566574..27566598 (25 bp)
GTATATTACAGAACTGAGGCACTGA
LOC_Os01g47600
Os.52073.1.S1_at--55--6211Chr01:27566589..27566613 (25 bp)
GAGGCACTGAGCTTTGTAATGGAAT
LOC_Os01g47600
Os.52073.1.S1_at--191--451Chr01:27566612..27566636 (25 bp)
ATCTATATATAGTCAGTTTCCTGCT
LOC_Os01g47600
Os.52073.1.S1_at--403--1211Chr01:27566626..27566650 (25 bp)
AGTTTCCTGCTCATTCTAGAGTGAA
LOC_Os01g47600
Os.52073.1.S1_at--660--3711Chr01:27566641..27566665 (25 bp)
CTAGAGTGAACTATCGTCTTGTGAT
LOC_Os01g47600
Os.52073.1.S1_at--41--8831Chr01:27566670..27566694 (25 bp)
TGATAGCTTTGGATCGAGTATTCGC
LOC_Os01g47600
Os.52073.1.S1_at--437--491Chr01:27566682..27566706 (25 bp)
ATCGAGTATTCGCTGGTACACCACC
LOC_Os01g47600
Os.52073.1.S1_at--29--7851Chr01:27566696..27566720 (25 bp)
GGTACACCACCAGTGCTTGAAATAA
LOC_Os01g47600
Target Sequence 
GTGAACGTCGGGTAGTTGTTCCGATGGTTCACCCAAGTAATTGGATGGACGAATCAATTGTATATTACAGAACTGAGGCA
CTGAGCTTTGTAATGGAATCTATATATAGTCAGTTTCCTGCTCATTCTAGAGTGAACTATCGTCTTGTGATAAAGTGATA
GCTTTGGATCGAGTATTCGCTGGTACACCACCAGTGCTTGAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis